View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_high_23 (Length: 384)
Name: NF11482_high_23
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 54847678 - 54848060
Alignment:
| Q |
1 |
attgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgataacatacaactcttttacc |
97 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54847678 |
attgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgataacatacaactcttttacc |
54847777 |
T |
|
| Q |
98 |
----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctctcataccataattttata |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
54847778 |
tataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctctcataccataattttata |
54847876 |
T |
|
| Q |
182 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaacaattgtattttataattt |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54847877 |
tttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaaca-tttttaacaattgtattttataattt |
54847975 |
T |
|
| Q |
282 |
ttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagt |
366 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54847976 |
ttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatattcaacatgagttcacttggaacaagtttctcacaaaagt |
54848060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University