View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_29 (Length: 365)
Name: NF11482_high_29
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 10506049 - 10506394
Alignment:
| Q |
1 |
agaagagaatgagaatgagactatgtccaattttgattatacataacaataacatagtcaaaacaaaatggaaacaaagaaagaatcatttggtttgaga |
100 |
Q |
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| T |
10506049 |
agaagagaatgagaatgagactatgtccaattttgtttatacataacaataacatagtcaaaacaaaatggaaacaaagaaagaatcatttggattgaga |
10506148 |
T |
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| Q |
101 |
agtgcaacgtgaaggaatataactaccattaagaggatgaaatttaagttggcactcaagtttacacccgaatttaaaagaaccaaacggtccaattctc |
200 |
Q |
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| T |
10506149 |
agtgcaacgtgaaggaatataactaccattaagaggatgaaatttaagttgacactcaagtttacacccgaatttaaaagaaccaaacggtccaattctc |
10506248 |
T |
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| Q |
201 |
cattgagttctagcatcacccttcaaatcaaacccaacaatatttctcttccatgtatcatcaacatcctcaatctgatcaggagtcaaaggaatagaag |
300 |
Q |
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| T |
10506249 |
cattgagttctagcatcacccttcaaatcaaacccaacaatatttctcttccatgtatcatcaacatcctcaatctgatcaggagtcaaaggaatagaag |
10506348 |
T |
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| Q |
301 |
aagattgaacaacataatccaaatacctagaactattcttaggaac |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10506349 |
aagattgaacaacataatccaaatacctagaactattcttaggaac |
10506394 |
T |
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