View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_3 (Length: 665)
Name: NF11482_high_3
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 92 - 657
Target Start/End: Original strand, 41446482 - 41447046
Alignment:
| Q |
92 |
tattctacttcattaatgcaagagcaaacagataaagaaaggtttattgaaaaaagggtaattttagaagctgaagaaacggatagtgatgaagatgaag |
191 |
Q |
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| T |
41446482 |
tattctacttcatcaatgcaagagcaaacagataaagaaaggtttattgaaaaaagggtaattttagaagctgaagaaacggatagtgatgaagatgaag |
41446581 |
T |
|
| Q |
192 |
atgttggagaactaaaacagagtgttgaaagtgtaaaaacagaggaaccaagttcttcatctttgagtggtggcatagacacggggagtgatgaaggacc |
291 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
41446582 |
atgttggagaactaaaacagagtgttaaaagtgtaaaaacagaggaaccatgttcttcatctttgagtggtggcatagacacagtgagtgatgaaggacc |
41446681 |
T |
|
| Q |
292 |
tgatgtggataaaaaagctgatgaattcattgccaaattcagagaacaaataaggcttcaaagaattgaatctatcaagagaagtacacgagttgcaaga |
391 |
Q |
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| T |
41446682 |
tgatgtggataaaaaagctgatgaattcattgccaaattcagagaacaaataaggcttcaaagaattgaatctatcaagagaagtacacgagttgcaaga |
41446781 |
T |
|
| Q |
392 |
aattcttcaaggtaatcttcaacttgaagattcttctgaataactattggagtgttattattatgannnnnnnnnnnncaaaatttaaatgggatgtaat |
491 |
Q |
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| T |
41446782 |
aattcttcaaggtaatcttcaacttgaagattcttctgaataactattggagtgttattattatgatattatttttttcaaaatttaaatgggatgtaat |
41446881 |
T |
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| Q |
492 |
taaaatggatgttttctttccatggtattaagtaaggttgtaattactaattggattatgtcttaattctctctagtaagatccaagttaaggattctgc |
591 |
Q |
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| T |
41446882 |
taaaatggatgttttctttccatggtattaagtaaggttgtaattactaattggattatgtcctaattctctctagtaagat-caagttaaggattctgc |
41446980 |
T |
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| Q |
592 |
tgtcctatttcctatgatgtttttgagatgagttaggggatagggcaacttgtgtttgttcatctc |
657 |
Q |
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| T |
41446981 |
tgtcctatttcttatgatgtttttgagatgagttaggggatagggcaacttgtgtttgttcatctc |
41447046 |
T |
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