View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_34 (Length: 329)
Name: NF11482_high_34
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 48670034 - 48670336
Alignment:
| Q |
11 |
aagaatttcatcaacgaatctttgtatattcctgtcagaagagccaccatcagccaccgcctccctcgccgcatgtttcagctccaacgcatttttctta |
110 |
Q |
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| T |
48670034 |
aagaatttcatcaacgaatctttgtatattcctgtcagaagagccaccatcagccaccgcctccctcgccgcatgtttcagctccaacgcatttttctta |
48670133 |
T |
|
| Q |
111 |
aacacttcagacctttctcctccaacaatttcttcaatggctctttcaacttcatcactttcaacaaacccatcattgtcctgtttcaaccggatcccca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48670134 |
aacacttcagacctttctcctccaacaatttcttcaatggctctttcaacttcatcactttcaacaaacccatcattgtcctgtttcaaccggatcccca |
48670233 |
T |
|
| Q |
211 |
tacgaaaaacatcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtaga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48670234 |
tacgaaaaacatcagaaacaagtgttgcatttgttggttgatcagtccattgtggataaccaatcataggtactcctgcagttatagcttccaatgtaga |
48670333 |
T |
|
| Q |
311 |
att |
313 |
Q |
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||| |
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| T |
48670334 |
att |
48670336 |
T |
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