View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_high_37 (Length: 319)

Name: NF11482_high_37
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_high_37
NF11482_high_37
[»] chr2 (12 HSPs)
chr2 (19-312)||(12011988-12012281)
chr2 (18-312)||(12005559-12005853)
chr2 (33-312)||(11986937-11987216)
chr2 (78-312)||(12018383-12018611)
chr2 (127-185)||(10348313-10348371)
chr2 (129-173)||(14550914-14550958)
chr2 (127-182)||(8573046-8573101)
chr2 (117-172)||(8579033-8579088)
chr2 (126-169)||(9365193-9365236)
chr2 (117-184)||(10336367-10336434)
chr2 (127-164)||(9357732-9357769)
chr2 (223-308)||(10336243-10336328)
[»] chr1 (3 HSPs)
chr1 (126-186)||(29452859-29452919)
chr1 (78-163)||(29442819-29442904)
chr1 (78-173)||(29467285-29467380)
[»] chr8 (1 HSPs)
chr8 (126-186)||(41966263-41966323)
[»] scaffold0667 (1 HSPs)
scaffold0667 (127-173)||(5020-5066)
[»] chr4 (1 HSPs)
chr4 (126-154)||(561786-561814)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 12011988 - 12012281
Alignment:
Q  19 taaccaccccccttccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccga 118  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12011988 taaccacccctcttccactccatcatcctctgtcttacaccaagcgcatcacactctttggttcatgtaacggcctcatctgcatttcctcaaacaccga 12012087  T
Q  119 aaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgcctttttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12012088 aaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgaaaccaaaatccactacgcctttttc 12012187  T
Q  219 acttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012188 acttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 12012281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 12005559 - 12005853
Alignment:
Q  18 ctaaccaccccccttccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccg 117  Q
    ||||||||| || | ||||||||||| ||||||||  || ||||  |||||| |||||| ||||||||||| |||||  ||||||||||||| ||  |||    
T  12005559 ctaaccaccgccatcccactcaaccaccctctgtccaacgccaacggcatcaaactcttcggttcatgtaacggcctcctctgcatttcctccaaagccg 12005658  T
Q  118 aaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgccttttt 217  Q
    ||| | | |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||| ||    
T  12005659 aaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcctcaatctgagaccaaagcccactacgccttatt 12005758  T
Q  218 cacttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||| ||||||||||||||    
T  12005759 cacttacggattcggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcatcgatttaacaaactttacttttgattcat 12005853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 11986937 - 11987216
Alignment:
Q  33 ccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctgga 132  Q
    ||||||||||| ||||||| ||||||||| |||||| |||| || ||||||||||| |||||  ||||||||||||| |||| ||||| ||| |||||||    
T  11986937 ccactcaaccaccctctgttttacaccaaccgcatcgcacttttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctgga 11987036  T
Q  133 accctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgcctttttcacttacggatttgg 232  Q
    ||||||||| ||||||||||| |||||||||| |||||| | |  || ||||||||||||| | ||| ||||||| ||||||   || | ||||||| ||    
T  11987037 accctaacacccgtaaacatcggattatccctcatctccttatcccttttcctcaatctgatatcaacatccacttcgccttaaccattcacggattcgg 11987136  T
Q  233 ctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    |||||||||||| || ||||| ||||| || ||||||||||||||||| |||||| |||| |||  ||||||||||||||    
T  11987137 ctttgatcctttttcatccgattacaaactcatcagaatctcttggtttgttgatctacacaaccgtacttttgattcat 11987216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 12018383 - 12018611
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgttt 177  Q
    ||||||||||| |||||  ||||||||||||| |||| ||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||||          
T  12018383 ggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctcc------ 12018476  T
Q  178 ctattcctcaatctgagaccaaaatccactacgcctttttcacttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttg 277  Q
    |||||||||||||||| | |||  | || |  ||||||| |  |||||| || || ||||||||||| ||||| || || || ||| |||||||||||||    
T  12018477 ctattcctcaatctgacagcaatttgcaatttgccttttgcgtttacggcttcggttttgatcctttgtcctctgattataaacttgtcagaatctcttg 12018576  T
Q  278 gttcgttgatttacaaaactctacttttgattcat 312  Q
    ||| |||||| |||| |||  ||||||||||||||    
T  12018577 gtttgttgatctacacaaccgtacttttgattcat 12018611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 10348371 - 10348313
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcct 185  Q
    ||||||||||||||| |||||||||||| |||||||||  ||||||| || ||||||||    
T  10348371 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattcct 10348313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 14550958 - 14550914
Alignment:
Q  129 tggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||    
T  14550958 tggaaccctaacatccgtaaacatcgcattatccctgatctccct 14550914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 8573046 - 8573101
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctatt 182  Q
    ||||||||||||||| |||||||||||| |||||||||  ||||||| || |||||    
T  8573046 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 8579033 - 8579088
Alignment:
Q  117 gaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccc 172  Q
    |||| ||| ||||||||||||||||||||||||||||   |||||||| |||||||    
T  8579033 gaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 9365236 - 9365193
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatct 169  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||    
T  9365236 ttctggaaccctaacatccgtaaacatcggatcatcccttatct 9365193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 10336434 - 10336367
Alignment:
Q  117 gaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcc 184  Q
    |||| ||| ||||| || |||| |||||||||||||| |||||||||| |||||||| || |||||||    
T  10336434 gaaatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 9357769 - 9357732
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccct 164  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9357769 tctggaaccataacatccgtaaacatcacattatccct 9357732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 10336328 - 10336243
Alignment:
Q  223 acggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgat 308  Q
    ||||||| || |||||| | |||||| |||| ||||| ||  ||||||||||||||||||| ||| ||||| ||  ||||||||||    
T  10336328 acggattcggttttgattcattatccgccgattacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgat 10336243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 29452859 - 29452919
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctc 186  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  29452859 ttctggaaccctaacatccgtaaacatcagaatattcctaatctccctatttctattcctc 29452919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 29442819 - 29442904
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccc 163  Q
    ||||||||||| |||||| ||||||||||||| ||  | | || ||| |||||||||||||||||||||||||| | |||||||||    
T  29442819 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccc 29442904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 29467285 - 29467380
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    ||||||||||| |||||| |||||||||||   ||   || || ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  29467285 ggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatccgtaaacatcggattattcctaatctccct 29467380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 41966263 - 41966323
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctc 186  Q
    |||||||||||||||||| ||||||||| ||||||||||  ||||||| || |||||||||    
T  41966263 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcctc 41966323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 5066 - 5020
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||    
T  5066 tctggaaccctaacatccgtaaacatcacattatcccttttctccct 5020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 561814 - 561786
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatca 154  Q
    |||||||||||||||||||||||||||||    
T  561814 ttctggaaccctaacatccgtaaacatca 561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University