View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_42 (Length: 284)
Name: NF11482_high_42
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 33079777 - 33079502
Alignment:
| Q |
1 |
gcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataa---caaataaattgaatgtaatcacatgtgtcggacacgaacaaaca |
97 |
Q |
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| T |
33079777 |
gcaaataactacatgacacgttgaaaccggtagtaatataagaaaataaataataacaaataaattgaatgtaatcacatgtgtcggacacgaacgaaca |
33079678 |
T |
|
| Q |
98 |
tgtgtcataaaccggatacgtctttgatcagaaagaaatattggtgtttaaaagagaatgaaatgaaaaagtaggttatgatgattacgtaccaatgaac |
197 |
Q |
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||| ||| | || |||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079677 |
tgtatcagacacaggatacgtctctgatcagaaa----tatcgatgtttaaaagagaatgaaatgaaaaagtaggttatgatgattacgtaccaatgaac |
33079582 |
T |
|
| Q |
198 |
agagagctccgatctatgacagagctctc------------tttgaaacggaatgaaagagaaggtggtgaaacggaaac |
265 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
33079581 |
agagagctccgatctatgacagagctctctttgtctctctctttgaaacggaatgaaagagaaggtggtgaaaaggaaac |
33079502 |
T |
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