View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_high_45 (Length: 269)
Name: NF11482_high_45
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 15002056 - 15002200
Alignment:
| Q |
12 |
gagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaattttgtctctacacctcttttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15002056 |
gagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaatcccttctaaatgaacgaaattttgtctctacacctctgttc |
15002155 |
T |
|
| Q |
112 |
tagctttgacattcatgtattaacctttctcaagcttccttcaag |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15002156 |
tagctttgacattcatgtattaacctttctcaagcttcctccaag |
15002200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 9821499 - 9821353
Alignment:
| Q |
12 |
gagatgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaattttgtctctacacctcttttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9821499 |
gagatgaagaaacaacacccattatgaagaaagtacagcaacacctccattctcctaacctcttctaaatgaacgaaattttgtctctaaacctctattc |
9821400 |
T |
|
| Q |
112 |
tagctttgacattcatgtattaacctttctcaagcttccttcaagtt |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9821399 |
tagctttgacattcatgtattaacctttctcaagctttcttcaagtt |
9821353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 44061210 - 44061349
Alignment:
| Q |
16 |
tgaagaaacaacacccattatgcagaaagtacagcaacacctccattctcctaaccccttctaaatgaacgaaattttgtctctacacctcttttctagc |
115 |
Q |
| |
|
|||||||| ||||| ||| |||||||| ||||||||||| ||| ||||| ||| |||||| ||| | || || | | ||||||| ||| || ||||||| |
|
|
| T |
44061210 |
tgaagaaagaacactgattctgcagaaaatacagcaacacttcccttctcataaacccttcaaaaagcacaaattctggtctctaaacccctattctagc |
44061309 |
T |
|
| Q |
116 |
tttgacattcatgtattaacctttctcaagcttccttcaa |
155 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
44061310 |
ttcaacattcaagtattaacctttctatagcttccttcaa |
44061349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University