View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_high_48 (Length: 261)

Name: NF11482_high_48
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_high_48
NF11482_high_48
[»] chr8 (14 HSPs)
chr8 (92-251)||(11030213-11030372)
chr8 (18-99)||(11030460-11030541)
chr8 (100-214)||(11120553-11120667)
chr8 (100-197)||(11107368-11107465)
chr8 (100-201)||(11593556-11593657)
chr8 (15-91)||(10600378-10600453)
chr8 (15-89)||(5892429-5892502)
chr8 (18-54)||(18672349-18672385)
chr8 (18-74)||(24680982-24681038)
chr8 (18-99)||(13110034-13110116)
chr8 (18-52)||(22713846-22713880)
chr8 (23-99)||(15341111-15341186)
chr8 (23-99)||(15430176-15430251)
chr8 (23-99)||(15521480-15521555)
[»] chr5 (6 HSPs)
chr5 (18-87)||(25667468-25667537)
chr5 (15-91)||(22987569-22987644)
chr5 (18-96)||(19926933-19927010)
chr5 (18-99)||(19924206-19924286)
chr5 (18-99)||(31533217-31533297)
chr5 (21-91)||(28619441-28619510)
[»] scaffold0039 (1 HSPs)
scaffold0039 (18-99)||(33435-33515)
[»] chr7 (5 HSPs)
chr7 (18-99)||(9022737-9022817)
chr7 (18-99)||(7524926-7525006)
chr7 (15-99)||(10649464-10649547)
chr7 (15-52)||(18084173-18084210)
chr7 (15-53)||(11994120-11994158)
[»] chr3 (5 HSPs)
chr3 (15-91)||(14132280-14132355)
chr3 (15-99)||(53589306-53589390)
chr3 (15-53)||(25321074-25321112)
chr3 (15-53)||(44451069-44451107)
chr3 (15-91)||(15987413-15987488)
[»] chr6 (8 HSPs)
chr6 (18-99)||(16142386-16142466)
chr6 (18-99)||(17296399-17296479)
chr6 (23-99)||(24154357-24154432)
chr6 (15-99)||(28712208-28712291)
chr6 (21-100)||(242231-242309)
chr6 (15-74)||(6038821-6038880)
chr6 (15-53)||(34992232-34992270)
chr6 (18-91)||(9404582-9404654)
[»] chr2 (6 HSPs)
chr2 (15-99)||(31404279-31404362)
chr2 (15-99)||(17162191-17162274)
chr2 (15-75)||(17676430-17676490)
chr2 (18-99)||(32890239-32890318)
chr2 (18-75)||(17636572-17636629)
chr2 (14-74)||(2481891-2481951)
[»] chr1 (3 HSPs)
chr1 (23-99)||(25018479-25018554)
chr1 (18-52)||(17615146-17615180)
chr1 (18-52)||(20866109-20866143)
[»] chr4 (7 HSPs)
chr4 (20-91)||(9354661-9354731)
chr4 (18-91)||(4697305-4697377)
chr4 (18-91)||(6337836-6337911)
chr4 (18-91)||(16674937-16675009)
chr4 (18-75)||(41457399-41457456)
chr4 (15-91)||(16288573-16288648)
chr4 (15-89)||(24476143-24476216)
[»] scaffold0337 (2 HSPs)
scaffold0337 (18-52)||(4435-4469)
scaffold0337 (18-52)||(17110-17144)
[»] scaffold0142 (1 HSPs)
scaffold0142 (18-47)||(20434-20463)
[»] scaffold0167 (1 HSPs)
scaffold0167 (15-99)||(696-779)
[»] scaffold0148 (1 HSPs)
scaffold0148 (17-89)||(22845-22915)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 11030372 - 11030213
Alignment:
Q  92 gtaggattcatttgctcatctggtttagttgaaaatatgcattttgaatcaatcagttttacttggtgattttactccttctaattcaaaggatgcaaat 191  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11030372 gtagcattcatttgctcatctggtttagttgaaaatatgcattttgaatcaatcagttttacttggtgattttactcattctaattcaaaggatgcaaat 11030273  T
Q  192 cattcatgatcattttctatagtgggagctagtggtctcagatagccttgcggatttcat 251  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  11030272 cattcatgatcattttctatagtaggagctagtggtctcagatagccttgtggatttcat 11030213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 11030541 - 11030460
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11030541 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 11030460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 214
Target Start/End: Original strand, 11120553 - 11120667
Alignment:
Q  100 catttgctcatctggtttagttgaaaatatgcattttgaatcaatcagttttacttggtgattttactccttctaattcaaaggatgcaaatcattcatg 199  Q
    |||||| ||||||||||||||||||||| |||||||||| || || |||||||| ||||||||||| || |||||||||||||| |||||| ||| ||||    
T  11120553 catttgttcatctggtttagttgaaaatctgcattttgagtccataagttttacctggtgattttattcattctaattcaaagggtgcaaaccatccatg 11120652  T
Q  200 atcattttctatagt 214  Q
    |||| | ||||||||    
T  11120653 atcaatctctatagt 11120667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 11107368 - 11107465
Alignment:
Q  100 catttgctcatctggtttagttgaaaatatgcattttgaatcaatcagttttacttggtgattttactccttctaattcaaaggatgcaaatcattca 197  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||| |||||||  ||||| |||||||| ||||    
T  11107368 catttgctcatctggtttagttgaaaatttgcattttgaatcaatcagttttacttggtaatcttgctcattctaatagaaagggtgcaaatctttca 11107465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 11593556 - 11593657
Alignment:
Q  100 catttgctcatctggtttagttgaaaatatgcattttgaatcaatcagttttacttggtgattttactccttctaattcaaaggatgcaaatcattcatg 199  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||  ||| | |||||||| ||||||    
T  11593556 catttgctcatctggtttagtcgaaaatctgcattttgaatcaatcagttttacttggtaattttgctcattctaatagaaaaggtgcaaatctttcatg 11593655  T
Q  200 at 201  Q
    ||    
T  11593656 at 11593657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 10600378 - 10600453
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||||||||| ||||||||||||||| |||  |||||||||||| |||||||| |||| |||||||||||    
T  10600378 tcatcttgttcataaagtaacctatgaatttgatgaaagctcgctcattttatggaaaaa-cattacacaacatgtc 10600453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 5892502 - 5892429
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatg 89  Q
    ||||||||||||||||| ||||||||||| ||| ||||| ||  ||||||| ||| |||| ||||||||||||||    
T  5892502 tcatcttgttcataaagtaacctatgaatatgatgaacattcaatcattttttgg-aaaatcattgcacaacatg 5892429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 18672349 - 18672385
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacac 54  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18672349 tcttgttcataaagcaacctatgaatttgatgaacac 18672385  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 24680982 - 24681038
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaa 74  Q
    ||||||||||||| |||||||| ||||||| ||||| || ||| |||||||||||||    
T  24680982 tcttgttcataaatcaacctatcaatttgatgaacattcactctttttctggaaaaa 24681038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 13110116 - 13110034
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctc---attttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||||||||||||| |||| | | |||   |||||||   |||||| |||||||||||||| |||||||    
T  13110116 tcttgttcataaagcaacctatgaatttgatgaacgcacactccttattttct--taaaacctttgcacaacatgtcctaggatt 13110034  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 22713846 - 22713880
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaac 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  22713846 tcttgttcataaagcaacctatgaatttgatgaac 22713880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 15341111 - 15341186
Alignment:
Q  23 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||| ||||||||    ||||||||| ||||  ||||||||| ||||| |||||||    
T  15341111 ttcataaagcaacctatgaatatgatgaacactcatgtattttctgg-aaaatgattgcacaatatgtcataggatt 15341186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 15430176 - 15430251
Alignment:
Q  23 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||| ||||||||    ||||||||| ||||  ||||||||| ||||| |||||||    
T  15430176 ttcataaagcaacctatgaatatgatgaacactcatgtattttctgg-aaaatgattgcacaatatgtcataggatt 15430251  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 15521480 - 15521555
Alignment:
Q  23 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||| ||||||||    ||||||||| ||||  ||||||||| ||||| |||||||    
T  15521480 ttcataaagcaacctatgaatatgatgaacactcatgtattttctgg-aaaatgattgcacaatatgtcataggatt 15521555  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25667468 - 25667537
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaaca 87  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  25667468 tcttgttcataaagcaacctatgaatttgatgaactctcactcattttctgaaaaaaccattgcacaaca 25667537  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 22987644 - 22987569
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    |||||||||| |||||||||||||||||| ||| ||||| || | || ||||||||||||  |||||||||||||||    
T  22987644 tcatcttgtttataaagcaacctatgaatatgatgaacattcacacactttctggaaaaa-gattgcacaacatgtc 22987569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 19926933 - 19927010
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtagg 96  Q
    |||||||||||||||||||||||||||||| ||||||   ||| ||||||  |||||| | ||||||||||||| ||||    
T  19926933 tcttgttcataaagcaacctatgaatttgatgaacacgaactctttttct-taaaaacaaatgcacaacatgtcctagg 19927010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 19924206 - 19924286
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||||||||||||| |||| |   ||| ||||||  |||||| | ||||||||||||| |||||||    
T  19924206 tcttgttcataaagcaacctatgaatttgatgaacgcgaactctttttct-taaaaacaaatgcacaacatgtcctaggatt 19924286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 31533217 - 31533297
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||  ||||||||||| | | |||||||| |||| ||||| |||||| | |||||||||||||| |||||||    
T  31533217 tcttgttcataaataaacctatgaatcttatgaacactcactcaatttct-gaaaaaactttgcacaacatgtcctaggatt 31533297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 28619441 - 28619510
Alignment:
Q  21 tgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||||||| ||||||| ||| ||||| || | |||||||||| ||||  |||||||||||||||    
T  28619441 tgttcataaagcaacttatgaatatgatgaacattcacacattttctgg-aaaaggattgcacaacatgtc 28619510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 33435 - 33515
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||||||| | ||| |||||||| |||| |||||||||||| | |||||||||||||| |||||||    
T  33435 tcttgttcataaagcaacctatgagtctgatgaacactcactcactttctggaaaaa-ctttgcacaacatgtcataggatt 33515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 9022737 - 9022817
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||||||||||||| ||||  || |||||||| || ||||| |||||||||||||||| |||||||    
T  9022737 tcttgttcataaagcaacctatgaatttgatgaacgttcactcattttttgtaaaaa-cattgcacaacatgtcctaggatt 9022817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 7524926 - 7525006
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||| ||||||||||||||||||||| |||||||| || | ||||| |||||| |||||| || |||||| |||||||    
T  7524926 tcttgttcgtaaagcaacctatgaatttgatgaacactcacttactttct-gaaaaaacattgcgcaccatgtcttaggatt 7525006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 10649464 - 10649547
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||| | ||||||||||||| |||| | | ||| |||| |||||||||| |||||||| ||||| |||||||    
T  10649464 tcatcttgttcataaagtaccctatgaatttgatgaacgcacactctttttatggaaaaacc-ttgcacaaaatgtcataggatt 10649547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 18084210 - 18084173
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaac 52  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  18084210 tcatcttgttcataaagcaacctatgaatttgatgaac 18084173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 11994120 - 11994158
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaaca 53  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  11994120 tcatcttgttcataaagcaacctatgaatatgatgaaca 11994158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 14132280 - 14132355
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||||||||| ||||||||||||||| ||||| || |||| ||| |||||||| ||||||||||||||||    
T  14132280 tcatcttgttcataaagaaacctatgaatttgatgaacattcactcactttttggaaaaa-cattgcacaacatgtc 14132355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 53589306 - 53589390
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||||||| ||| ||||| ||    |||||||| |||||  ||||||||| ||||| |||||||    
T  53589306 tcatcttgttcataaagcaacatatgaatatgatgaacattcatgtattttctgaaaaaaagattgcacaaaatgtcctaggatt 53589390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 25321112 - 25321074
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaaca 53  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  25321112 tcatcttgttcataaagcaacctatgaatatgatgaaca 25321074  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 44451069 - 44451107
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaaca 53  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  44451069 tcatcttgttcataaagcaacctatgaatatgatgaaca 44451107  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 15987488 - 15987413
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||||||||||||||||||||  ||| ||||| ||    ||||| ||||||||  |||||||||||||||    
T  15987488 tcatcttgttcataaagcaacctatgaaaatgatgaacattcatatattttatggaaaaa-gattgcacaacatgtc 15987413  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 16142466 - 16142386
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||| |||||||||||| ||| || ||||| |||| |||||||||||| | |||||||||||||| |||||||    
T  16142466 tcttgttcataaaccaacctatgaatctgatgaccactcactcactttctggaaaaa-ctttgcacaacatgtcctaggatt 16142386  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 17296399 - 17296479
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||| ||||||||| |||| ||| ||||| |||||||||||   ||||||||||||| ||||||||    
T  17296399 tcttgttcataaagcaacctctgaatttgatgaacgctcactcatattctggaaaaa-atttgcacaacatgttgtaggatt 17296479  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 24154357 - 24154432
Alignment:
Q  23 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||| ||||||||    ||||||||||||||  ||||||||||| ||| |||||||    
T  24154357 ttcataaagcaacctatgaatatgatgaacactcatgaattttctggaaaaa-gattgcacaacaagtcctaggatt 24154432  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 28712291 - 28712208
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||||||||||| | | ||||| ||   || ||| ||||||||  ||||||||||||||| |||||||    
T  28712291 tcatcttgttcataaagcaacctatgaatattatgaacattcatacactttatggaaaaa-gattgcacaacatgtcctaggatt 28712208  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 242231 - 242309
Alignment:
Q  21 tgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggattc 100  Q
    ||||||||||| ||||||||||| ||| ||||| ||   || ||||||||||||  ||||||||||||||| ||||||||    
T  242231 tgttcataaagtaacctatgaatatgatgaacattcaagcactttctggaaaaa-tattgcacaacatgtcctaggattc 242309  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 6038880 - 6038821
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaa 74  Q
    |||||||||||||||||||| |||||||| ||| ||||| ||   |||||||||||||||    
T  6038880 tcatcttgttcataaagcaaactatgaatatgatgaacattcaagcattttctggaaaaa 6038821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 34992270 - 34992232
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaaca 53  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  34992270 tcatcttgttcataaagcaacctatgaatatgatgaaca 34992232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9404654 - 9404582
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||||||||||||||||| |||| ||||   |  || ||||||||||||| | ||||||||||||||    
T  9404654 tcttgttcataaagcaacctatgaaattgatgaacgaacattctttttctggaaaaa-ctttgcacaacatgtc 9404582  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 31404279 - 31404362
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||| |||||||||||||||||||||||||||| |||| ||| |||  |||||||| ||| | |||||||||||||| |||||||    
T  31404279 tcatgttgttcataaagcaacctatgaatttgatgaacgctcactctatttctggataaa-ctttgcacaacatgtcctaggatt 31404362  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 17162191 - 17162274
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||| ||||||||||||||||||||| ||| ||||| ||    ||||| ||||||||  ||||||||||||||| |||||||    
T  17162191 tcatcttattcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaa-gattgcacaacatgtcataggatt 17162274  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 17676490 - 17676430
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaac 75  Q
    ||||||||||||||||||||| |||| || ||| |||||||| |||| |||||| ||||||    
T  17676490 tcatcttgttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaac 17676430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 32890318 - 32890239
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    |||||||||||||||||||||||||| |||  ||||||| | || |||||  ||||  | |||||||||||||| |||||||    
T  32890318 tcttgttcataaagcaacctatgaatgtgataaacactcacccactttctctaaaa--ctttgcacaacatgtcttaggatt 32890239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 17636629 - 17636572
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaac 75  Q
    |||||||||||||||||| |||| || ||| |||||||| |||| |||||| ||||||    
T  17636629 tcttgttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaac 17636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 2481951 - 2481891
Alignment:
Q  14 atcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaa 74  Q
    ||||||||||||||||| ||| |||||||| |||| ||||||| | || ||| ||||||||    
T  2481951 atcatcttgttcataaatcaaactatgaatatgacaaacactcacacactttatggaaaaa 2481891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 25018554 - 25018479
Alignment:
Q  23 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||||| ||||||  ||||||||||||||| |||||||    
T  25018554 ttcataaagcaacctatgaatatgatgaacactcgcgtattttctagaaaaa-gattgcacaacatgtcctaggatt 25018479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 17615180 - 17615146
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaac 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  17615180 tcttgttcataaagcaacctatgaatttgatgaac 17615146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 20866143 - 20866109
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaac 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  20866143 tcttgttcataaagcaacctatgaatttgatgaac 20866109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 9354661 - 9354731
Alignment:
Q  20 ttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    ||||||||||| |||||||||||||||| ||||  || ||| ||||||||||||| ||||||||||||||||    
T  9354661 ttgttcataaaacaacctatgaatttgatgaacgttcactctttttctggaaaaa-cattgcacaacatgtc 9354731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 4697377 - 4697305
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    |||||||||||||||||||||||||||||| |||  ||| ||| ||| ||||||||| | ||||||||||||||    
T  4697377 tcttgttcataaagcaacctatgaatttgatgaatgctcactcttttcctggaaaaa-ctttgcacaacatgtc 4697305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 6337911 - 6337836
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctca---ttttctggaaaaaccattgcacaacatgtc 91  Q
    |||||||||||||||||||||||||||||| |||| || |||||   |||||| |||||| | ||||||||||||||    
T  6337911 tcttgttcataaagcaacctatgaatttgatgaacgctagctcactcttttct-gaaaaaactttgcacaacatgtc 6337836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 16675009 - 16674937
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    |||||||||||||||||||||| ||||||| |||  | | ||| ||||||||||||| | ||||||||||||||    
T  16675009 tcttgttcataaagcaacctataaatttgatgaaggcgcactctttttctggaaaaa-ctttgcacaacatgtc 16674937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 41457456 - 41457399
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaac 75  Q
    ||||||||||||| |||||||||||||||| ||||  || |||||||| |||||||||    
T  41457456 tcttgttcataaaacaacctatgaatttgatgaacgttcactcattttgtggaaaaac 41457399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 16288648 - 16288573
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 91  Q
    |||||||| ||||||| |||||||||||||||| ||||| ||   || ||||||||||||  |||||||||||||||    
T  16288648 tcatcttgctcataaaacaacctatgaatttgatgaacaatcatacactttctggaaaaa-gattgcacaacatgtc 16288573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 24476216 - 24476143
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatg 89  Q
    |||||||||||||||||||| |||||| | ||| ||||| ||   |||||||||||||||  |||||||||||||    
T  24476216 tcatcttgttcataaagcaaactatgactatgatgaacattcaaacattttctggaaaaa-gattgcacaacatg 24476143  T

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Target: scaffold0337 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 4469 - 4435
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaac 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  4469 tcttgttcataaagcaacctatgaatttgatgaac 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 17144 - 17110
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttgacgaac 52  Q
    |||||||||||||||||||||||||||||| ||||    
T  17144 tcttgttcataaagcaacctatgaatttgatgaac 17110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 20463 - 20434
Alignment:
Q  18 tcttgttcataaagcaacctatgaatttga 47  Q
    ||||||||||||||||||||||||||||||    
T  20463 tcttgttcataaagcaacctatgaatttga 20434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 696 - 779
Alignment:
Q  15 tcatcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtcgtaggatt 99  Q
    ||||| |||||||||||||||||||||| |||   |||| ||   |||||| ||||||||  ||||||||||||||| |||||||    
T  696 tcatcctgttcataaagcaacctatgaacttggttaacattcatacattttatggaaaaa-gattgcacaacatgtcctaggatt 779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 22915 - 22845
Alignment:
Q  17 atcttgttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatg 89  Q
    |||||||||||||| ||| |||||||| ||| ||||| ||| ||| ||||||| |||| ||||||||||||||    
T  22915 atcttgttcataaa-caaactatgaatatgatgaacattcgatcagtttctgg-aaaatcattgcacaacatg 22845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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