View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_high_52 (Length: 255)

Name: NF11482_high_52
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_high_52
NF11482_high_52
[»] chr2 (27 HSPs)
chr2 (14-255)||(12012438-12012679)
chr2 (17-255)||(12006010-12006248)
chr2 (14-255)||(11987379-11987620)
chr2 (39-250)||(9065489-9065701)
chr2 (15-255)||(12018774-12019020)
chr2 (14-255)||(10371867-10372102)
chr2 (13-255)||(10353117-10353353)
chr2 (27-170)||(10335866-10336009)
chr2 (39-255)||(9284082-9284298)
chr2 (14-255)||(10347794-10348029)
chr2 (27-255)||(9061027-9061261)
chr2 (14-255)||(7115531-7115775)
chr2 (27-255)||(8573391-8573625)
chr2 (39-255)||(9316053-9316266)
chr2 (39-255)||(9291971-9292169)
chr2 (37-158)||(9364660-9364781)
chr2 (14-170)||(9328608-9328764)
chr2 (27-158)||(16269111-16269242)
chr2 (35-170)||(9274551-9274686)
chr2 (14-170)||(9320991-9321144)
chr2 (40-123)||(7611974-7612057)
chr2 (105-158)||(8576398-8576451)
chr2 (200-253)||(10336024-10336077)
chr2 (42-118)||(8579516-8579592)
chr2 (203-255)||(16269272-16269324)
chr2 (40-123)||(17566107-17566190)
chr2 (205-253)||(9328784-9328832)
[»] scaffold0667 (1 HSPs)
scaffold0667 (29-255)||(4495-4721)
[»] chr1 (4 HSPs)
chr1 (14-253)||(29453207-29453437)
chr1 (14-255)||(29443222-29443454)
chr1 (27-253)||(29423287-29423504)
chr1 (39-158)||(29467769-29467888)
[»] chr7 (3 HSPs)
chr7 (27-149)||(45243721-45243843)
chr7 (30-140)||(45230457-45230570)
chr7 (27-114)||(45237972-45238059)
[»] chr4 (2 HSPs)
chr4 (27-255)||(26574883-26575105)
chr4 (35-123)||(561252-561340)
[»] chr8 (2 HSPs)
chr8 (39-170)||(41966682-41966813)
chr8 (198-255)||(41966615-41966672)
[»] chr3 (2 HSPs)
chr3 (27-158)||(37462511-37462645)
chr3 (42-113)||(39427680-39427751)
[»] chr5 (1 HSPs)
chr5 (41-102)||(36224454-36224515)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 12012679 - 12012438
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012679 caaaggtaaaacgaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 12012580  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  12012579 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaactactattacaaataacctcttcacctcatatttcatcaggaa 12012480  T
Q  214 atggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  12012479 atggaacctcattgaaaagctcaagtgttaggttaaacgcga 12012438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 12006248 - 12006010
Alignment:
Q  17 aggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttga 116  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12006248 aggtaaaacgaaacacgatcccatcaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttga 12006149  T
Q  117 tgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatg 216  Q
    | ||||||||||| ||||||||||||||||||||||||||||  |||||||||| | | ||||||||||||||||||||||| ||||||||||||||| |    
T  12006148 taattcacaatcaaacaaagacaccctcccaaatcagcaacattaatttcaaaactccgattacaaataacctcttcacctcttatttcatcaggaaaag 12006049  T
Q  217 gaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  12006048 gaacctcgttgaaaacctcaagtgttaggttaaacgcga 12006010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 11987620 - 11987379
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||| ||||||||||||| ||| || ||||||||||||||||||||| |||| |||||||||||||||||| | | |||||||||||||       
T  11987620 caaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccatattctttcatcacccaaatatcaatcttagta--- 11987524  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttca---cctcctatttcatcag 210  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||  |||||||||| |   | ||  | |||||||||||   ||||||||||||| ||    
T  11987523 tgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatcaatttcaaaacttgcactattagtaacctcttcacctcctcctatttcatgag 11987424  T
Q  211 gaaatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||    
T  11987423 gaaaaggaacctcattgaaaacctcgagtgttaggttaaatgcga 11987379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 9065701 - 9065489
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||||| |  ||||||| |||||||||| || ||||| ||||||||||||||    
T  9065701 accaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaaatcatacaaagac 9065602  T
Q  139 accctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctc-attgaaaacctcaa 237  Q
    ||||||||||| |||||||||  |||| |||| |   ||||| | ||||||||||||||| ||||||| ||||||  |||||||| ||||||||  ||||    
T  9065601 accctcccaaaacagcaacagtcatttgaaaactctcattactattaacctcttcacctcttatttcagcaggaaggggaacctcaattgaaaatttcaa 9065502  T
Q  238 gtgttaggttaaa 250  Q
    |||| ||||||||    
T  9065501 gtgtgaggttaaa 9065489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 12019020 - 12018774
Alignment:
Q  15 aaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagttt 114  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| | ||||||||| |||    
T  12019020 aaaggtaaaacgaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacacctatcttagtaattt 12018921  T
Q  115 ------gatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatc 208  Q
          ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| |  || | | | |||||| || ||||||||||| |      
T  12018920 gatttcgataattcataatcaaacaaagacaccctcccaaatcagcaacagcaatttgaaaacttatactcctattaacctttttacctcctattttagt 12018821  T
Q  209 aggaaatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||||  ||||||||||||||||  || ||||| |||||||| ||||    
T  12018820 aggaagaggaacctcattgaaaatatcgagtgtgaggttaaatgcga 12018774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 10371867 - 10372102
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| | ||||  ||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||| | | |||||  |||||||||    
T  10371867 caaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaacgttagtagtt 10371966  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    | || || |||| ||||||||||||||||||| ||| ||||||||  |||||||||   |||||||| | |||| ||||||   |||| ||||||||| |    
T  10371967 ttataatccacagtcatacaaagacaccctcctaaaacagcaacacgaatttcaaa---actattactattaacttcttca---cctagttcatcaggga 10372060  T
Q  214 atggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
      |||||||||||||||  |||||||| ||||||||||||||    
T  10372061 gaggaacctcattgaaagtctcaagtgataggttaaacgcga 10372102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 10353117 - 10353353
Alignment:
Q  13 gcaaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagt 112  Q
    ||||||||||| | ||| | ||||  |||| ||||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||| ||||||      
T  10353117 gcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaaacatcaattttagtatc 10353216  T
Q  113 ttgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcagga 212  Q
    || || || |||||||||||||||||||||||| ||| ||||||||  ||||| |||   ||| |||| | |||| ||||  ||| ||||||||||||||    
T  10353217 tttataatccacaatcatacaaagacaccctcctaaagcagcaacacgaattttaaa---actcttactattaacttctt--cct-ctatttcatcagga 10353310  T
Q  213 aatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |  |||||||||||||||  |||||||||||||||||||||||    
T  10353311 agaggaacctcattgaaagtctcaagtgttaggttaaacgcga 10353353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 10335866 - 10336009
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||| ||||||||||||||||| |||| |||||||||||||||||| | |||||||| ||||||||||||| |||||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
     || ||||||||||||||||||| |||||| |||||||| ||||    
T  10335966 gcaaacaaagacaccctcccaaaacagcaatagaaattttaaaa 10336009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 255
Target Start/End: Complemental strand, 9284298 - 9284082
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||| | || ||||| ||||||||||||| |||||||||||||| |||||    
T  9284298 accaaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaaacgtcaattttagtagtttgataattcacaatcatactaagac 9284199  T
Q  139 accctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctcattgaaaacctcaag 238  Q
    | ||||| ||| |||||||   ||  |||||| |   ||||  | | ||||| ||||||| |||  || ||||||  |||||||| ||||||||||| ||    
T  9284198 aacctcctaaaacagcaacctcaaggtcaaaactctgattattatttacctcctcacctcttataacagcaggaagaggaacctctttgaaaacctctag 9284099  T
Q  239 tgttaggttaaacgcga 255  Q
    |||||||||||||||||    
T  9284098 tgttaggttaaacgcga 9284082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 10347794 - 10348029
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| | |||||||| ||  ||| ||||||||||||||||||||||||| |||| |||||||||||||| ||| | |||||||| ||||||  |    
T  10347794 caaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaactatctctacatccatattctttcatgacccaaacatcaattttagtatct 10347893  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    | || ||  ||| | ||||||||||||||||||||| ||||||||  || ||||||   ||| | || | |||| ||||||   ||||||||||||||||    
T  10347894 ttataatcgacagtgatacaaagacaccctcccaaaacagcaacatgaacttcaaa---actctcaccattaacttcttca---cctatttcatcaggaa 10347987  T
Q  214 atggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
      ||||||||||||||||  |||||||| |||||||||||||    
T  10347988 gaggaacctcattgaaaatttcaagtgtgaggttaaacgcga 10348029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 9061261 - 9061027
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||||||||||||||||||||| || | ||||| |||||||||||| | |||||||| ||||||| || || |||||||     
T  9061261 aaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcacccaaacatcaattttagtagcttcataattcacag 9061162  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaa------aatactattacaaataacctcttcacctcctatttcatcaggaaatggaac 220  Q
     ||| ||||||||||| |||||| ||||||||  ||||| |||      | |||||||||   |||||||||||||| ||| |||| | ||||  |||||    
T  9061161 acatgcaaagacacccacccaaaacagcaacacgaattttaaaactcccattactattactgttaacctcttcaccttctaattcaacgggaagaggaac 9061062  T
Q  221 ctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||||||||||  |||||||| |||||||| ||||    
T  9061061 ctcattgaaaatttcaagtgtgaggttaaatgcga 9061027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 7115775 - 7115531
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||| |||| | |||||||| |  ||||| ||||||||||||||||| || ||| || | ||||||| |||||||||| | |||||  | |||||||||    
T  7115775 caaagataaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagtt 7115676  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaa---aaatactattacaaataacctcttcacctcctatttcatcag 210  Q
      || ||||||||||||||||||||||||||||||| |||||| ||||| |||||    | ||| || ||   |||| | ||||||||||| ||||||||    
T  7115675 ctataattcacaatcatacaaagacaccctcccaaaacagcaatagaaagttcaataccattaccatcactgttaactttttcacctcctaattcatcag 7115576  T
Q  211 gaaatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||  ||||||||| |||||  |||||||||||||||||||||||    
T  7115575 gaagaggaacctcaatgaaacgctcaagtgttaggttaaacgcga 7115531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 8573625 - 8573391
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  || ||||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||| | ||| |||| || |||||||     
T  8573625 aaacacgatttaacgaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaatttcagtggtttcataattcacag 8573526  T
Q  127 tcatacaaagacaccctcccaaatcagcaaca-gaaatttcaaa-----aatactattacaaataacctcttcacctcctatttcatcaggaaatggaac 220  Q
     ||||||||||||||| |||||| |||||| | ||||||| |||     | |||||||||   |||||||||||||| ||| |||| ||||||  |||||    
T  8573525 acatacaaagacacccacccaaaacagcaagacgaaatttaaaactcccattactattactgttaacctcttcaccttctaattcaacaggaagaggaac 8573426  T
Q  221 ctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    ||| | |||||  |||||||| |||||||| ||||    
T  8573425 ctcgtagaaaatttcaagtgtgaggttaaatgcga 8573391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 9316053 - 9316266
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||  |      ||||| |||||||||||| | |||||| | ||||||||||||| ||||| ||||||||||||||    
T  9316053 accaaagtaaaaagtttacaccaactagat------ccatagtctttcatcacccaaacatcagttttagtagtttgataattcaaaatcatacaaagac 9316146  T
Q  139 accctcccaaatcagcaacagaaatttcaaaaat---actattacaaataacctcttcacctcctatttcatcaggaaatggaacctcattgaaaacctc 235  Q
    ||||||||||| ||||||||| ||||| |||| |   ||  | || | ||||||||  || | |||||||| ||||||  |||||| ||||||||| |||    
T  9316147 accctcccaaaacagcaacagcaatttgaaaactctcacactcactattaacctctatactttctatttcagcaggaagaggaaccacattgaaaatctc 9316246  T
Q  236 aagtgttaggttaaacgcga 255  Q
    ||||||||||||||||||||    
T  9316247 aagtgttaggttaaacgcga 9316266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 9291971 - 9292169
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    |||||||||||||||||||||||||||||| || ||||||||| |||||||||| | |||||||| |||||||||| || ||||||| ||||||||||||    
T  9291971 accaaagtaaaaagtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcatacaaagac 9292070  T
Q  139 accctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctcattgaaaacctcaag 238  Q
    || |||| ||| ||||||||| ||||                   |||||||||||||| |||||||| ||||||| |||||| ||||||||  ||||||    
T  9292071 actctcctaaaacagcaacagcaattg------------------taacctcttcaccttctatttcagcaggaaaaggaaccacattgaaagtctcaag 9292152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 9364660 - 9364781
Alignment:
Q  37 ccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaag 136  Q
    ||||||||||||| | ||||||||||||||||||  | |||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||| |||    
T  9364660 ccaccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaag 9364759  T
Q  137 acaccctcccaaatcagcaaca 158  Q
    ||||||||||||| | ||||||    
T  9364760 acaccctcccaaaaccgcaaca 9364781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 9328608 - 9328764
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||||||||   ||||||||||  |||| ||||||||||||||||||||||||| || | ||||||| |||||||||| | |||||||| | |||||||    
T  9328608 caaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaaacatcaatttcagtagtt 9328707  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    | || ||||| | |||| |||||||||||||||||| || |||||  ||||||||||    
T  9328708 tcataattcaaagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaa 9328764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 16269111 - 16269242
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  ||||| ||||||||||| |||||||||||| || | ||||| |||||||||||| | |||||||| |||||||||| || |||||||     
T  16269111 aaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcacag 16269210  T
Q  127 tcatacaaagacaccctcccaaatcagcaaca 158  Q
    | ||||||||||| ||||||||| ||||||||    
T  16269211 ttatacaaagacatcctcccaaaacagcaaca 16269242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 9274551 - 9274686
Alignment:
Q  35 ttccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaa 134  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| | || ||||  | |||| || ||| ||||| | ||||||||    
T  9274551 ttccatcaaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaa 9274650  T
Q  135 agacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    ||||||||| ||||| || |||||  ||||||||||    
T  9274651 agacacccttccaaaacaacaacattaatttcaaaa 9274686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 9320991 - 9321144
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||| |  |||||||||  |||| ||||||||||||||||||||||||| || |||||||||||||||||||| | |||||||  || ||||||    
T  9320991 caaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcaacttttgtagtt 9321090  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaa 170  Q
    |  | ||    | |||| |||||||||||||||||| || |||||  ||||||||||    
T  9321091 tcgtaat---aagtcatgcaaagacaccctcccaaaacatcaacatcaatttcaaaa 9321144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  40 ccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||||||||| | ||||||||||||||||||  | |||||||||||||||||| | ||||||| |||| |||||| || |||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 8576451 - 8576398
Alignment:
Q  105 ttagtagtttgatgattcacaatcatacaaagacaccctcccaaatcagcaaca 158  Q
    |||||||||| || ||||||| ||||||||||||||||||| ||| ||||||||    
T  8576451 ttagtagtttcataattcacactcatacaaagacaccctccaaaaacagcaaca 8576398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 10336024 - 10336077
Alignment:
Q  200 tatttcatcaggaaatggaacctcattgaaaacctcaagtgttaggttaaacgc 253  Q
    ||||||||||||||  |||||||||||||||| |||||||| ||| ||||||||    
T  10336024 tatttcatcaggaagaggaacctcattgaaaatctcaagtgatagattaaacgc 10336077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 8579592 - 8579516
Alignment:
Q  42 aaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatg 118  Q
    |||||||| | |||||||||||||||| || | ||||||| |||||||||| | || |||| ||||||||| |||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaaccttagtagtgtgatg 8579516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 16269272 - 16269324
Alignment:
Q  203 ttcatcaggaaatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    |||| ||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  16269272 ttcagcaggaagaggaacctcgttgaaaatctcaagtgttaggttaaacgcga 16269324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  40 ccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||| ||||| | |||||||||| ||||| || | ||||||||||| |||||| | |||||||  ||||||||||||| |||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 9328784 - 9328832
Alignment:
Q  205 catcaggaaatggaacctcattgaaaacctcaagtgttaggttaaacgc 253  Q
    |||||||||  |||||| |||||||||  ||||||||||||||||||||    
T  9328784 catcaggaagaggaaccacattgaaaatttcaagtgttaggttaaacgc 9328832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 4495 - 4721
Alignment:
Q  29 acacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatc 128  Q
    |||||||| || || |||||||||||||||||||||||||||  | ||||||| |||||||||| | |||||||| |||||||||| || ||||||| ||    
T  4495 acacgatttcatcatagtaaaaagtttacaccaactatcttttaatccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtc 4594  T
Q  129 atacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctcattga 228  Q
    ||||||||||| ||||||||| ||||||||  |||||||| | |   |||  || ||||||||||  | |||||||| |||||||  |||||||||||||    
T  4595 atacaaagacatcctcccaaagcagcaacatcaatttcaacactgtcatttgaattaacctcttcttcacctatttcgtcaggaagaggaacctcattga 4694  T
Q  229 aaacctcaagtgttaggttaaacgcga 255  Q
    |||  ||||||||||||||||| ||||    
T  4695 aaatttcaagtgttaggttaaaagcga 4721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 29453437 - 29453207
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||||||  ||||| |||||| ||||||||||||||| |||||| |||||| |||| |||||||||||||||||| | |||||||| |||  ||||    
T  29453437 caaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaaacatcaattttaacagtt 29453338  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||  |||||||||   ||| | || | | || ||||||   ||||||   |||||||    
T  29453337 tgataattcacaatcatacaaagacacccttccaaaaccgcaacaccaatttcaaa---actctcactattcacttcttca---cctatt---tcaggaa 29453247  T
Q  214 atggaacctcattgaaaacctcaagtgttaggttaaacgc 253  Q
    | |||||||||||||||| |||  ||||||||||||||||    
T  29453246 aaggaacctcattgaaaatctcgtgtgttaggttaaacgc 29453207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 29443454 - 29443222
Alignment:
Q  14 caaaggtaaaacaaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    ||||||||||   |||||||||||  |||||||||||||||||||||| |||||| |||| |||||||||||||||||| | |||||||| |||| ||||    
T  29443454 caaaggtaaactgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtt 29443355  T
Q  114 tgatgattcacaatcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaa 213  Q
    |||| ||||||||||||||||||||||||| ||| | | | || |  ||||| |||   ||| | || | |||| ||||||   ||||||   |||||||    
T  29443354 tgataattcacaatcatacaaagacacccttccagaaccgaaataccaatttgaaa---actctcactattaacatcttca---cctatt---tcaggaa 29443264  T
Q  214 atggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    | |||||||||||||||| ||| |||||||||||||||||||    
T  29443263 aaggaacctcattgaaaatctcgagtgttaggttaaacgcga 29443222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 29423287 - 29423504
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    |||||||||||  |||||||||||||||||||||| |||||| |||| |||||||||||||||| | | |||||||| |||  |||||||| |||||||     
T  29423287 aaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaaacatcaattttaacagtttgataattcacag 29423386  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctcatt 226  Q
    |||||||||| |||||| ||| | | ||||||  |||||||||   ||| | || | | || ||||||   || |||   |||||||| |||||||||||    
T  29423387 tcatacaaaggcacccttccagaaccgcaacaccaatttcaaa---actctcactattcacttcttca---ccaatt---tcaggaaaaggaacctcatt 29423477  T
Q  227 gaaaacctcaagtgttaggttaaacgc 253  Q
    ||||| |||| ||||||||||||||||    
T  29423478 gaaaatctcatgtgttaggttaaacgc 29423504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 29467888 - 29467769
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||| | | |||||||| ||| ||||||||| |||||||||||   ||||||    
T  29467888 accaaagtaaaaagtttacgccaactatctctacatccatattctttcatcaaccaaacatcaattttactagtttgataattcacaatcaactaaagac 29467789  T
Q  139 accctcccaaatcagcaaca 158  Q
    ||||||||||| | ||||||    
T  29467788 accctcccaaaaccgcaaca 29467769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 45243721 - 45243843
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||||||||||||||||||||||| ||||| || |||||||||||||||||||| | |||||||| | | ||||||||| ||||||||    
T  45243721 aaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcacccaaacatcaatttcattagtttgataattcacaa 45243820  T
Q  127 tcatacaaagacaccctcccaaa 149  Q
    |||||||||||||| ||||||||    
T  45243821 tcatacaaagacactctcccaaa 45243843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 45230457 - 45230570
Alignment:
Q  30 cacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaata---catcaatcttagtagtttgatgattcacaa 126  Q
    |||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||| | |   ||||||| ||| ||||||||| ||||||||    
T  45230457 cacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaacatcatcaattttattagtttgataattcacaa 45230556  T
Q  127 tcatacaaagacac 140  Q
    ||||||||||||||    
T  45230557 tcatacaaagacac 45230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 45237972 - 45238059
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagttt 114  Q
    ||||||||||| || ||||||||||||||||||||||||||| || | |||||||||||||||||| | |||||||| | ||||||||    
T  45237972 aaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 255
Target Start/End: Original strand, 26574883 - 26575105
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaa 126  Q
    ||||||||||  |||| ||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||| ||||||  || || || ||||     
T  26574883 aaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccacag 26574982  T
Q  127 tcatacaaagacaccctcccaaatcagcaacagaaatttcaaaaatactattacaaataacctcttcacctcctatttcatcaggaaatggaacctcatt 226  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||   ||| |||| | |||| | ||   | ||||||||||||||||  |||||||| ||    
T  26574983 tcatacaaagacaccctcctaaatcagcaacacgaattttaaa---actcttactattaacttgtt---cccctatttcatcaggaagaggaacctcgtt 26575076  T
Q  227 gaaaacctcaagtgttaggttaaacgcga 255  Q
    ||||  ||||||||  |||||||| ||||    
T  26575077 gaaagtctcaagtgaaaggttaaaagcga 26575105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 561252 - 561340
Alignment:
Q  35 ttccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattca 123  Q
    |||| |||||||||| | |  ||||||||||||| || | |||||||||||||| ||| | ||||||| ||||||||||| || |||||    
T  561252 ttcctccaaagtaaacaatacacaccaactatctctaaatccatattctttcattacccaaacatcaaccttagtagttttattattca 561340  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 41966813 - 41966682
Alignment:
Q  39 accaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcacaatcatacaaagac 138  Q
    ||||||||||||||||||||||| |||||| || | | |||||||||||||||| | |||||||  |   ||||||||| || ||||| |||||||||||    
T  41966813 accaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccacaaccatacaaagac 41966714  T
Q  139 accctcccaaatcagcaacagaaatttcaaaa 170  Q
    ||||||||||| ||| ||||||||||||||||    
T  41966713 accctcccaaaacagaaacagaaatttcaaaa 41966682  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 41966672 - 41966615
Alignment:
Q  198 cctatttcatcaggaaatggaacctcattgaaaacctcaagtgttaggttaaacgcga 255  Q
    ||||||||| ||||||  |||||||  ||||||| |||||||||||||||||||||||    
T  41966672 cctatttcagcaggaagaggaacctggttgaaaatctcaagtgttaggttaaacgcga 41966615  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 158
Target Start/End: Original strand, 37462511 - 37462645
Alignment:
Q  27 aaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtag---tttgatgattca 123  Q
    ||||||||||   ||| |||| |||||||||||||||||||| || | |||||||||||||||||| | |||||||  |||||||   ||| || |||||    
T  37462511 aaacacgatttatccacagtacaaagtttacaccaactatctctagatccatattctttcatcacccaaacatcaaatttagtagtttttttataattca 37462610  T
Q  124 caatcatacaaagacaccctcccaaatcagcaaca 158  Q
    || ||||||||||||| ||||||||| ||||||||    
T  37462611 cagtcatacaaagacagcctcccaaaacagcaaca 37462645  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 39427680 - 39427751
Alignment:
Q  42 aaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtt 113  Q
    |||||||| | |||||||||||||| | || | |||||||||||||||||| | ||||||| |||| |||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaaacttattagtt 39427751  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 36224454 - 36224515
Alignment:
Q  41 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaa 102  Q
    ||||||||| | |||||||||||||||| || | |||||||||||||||||| | |||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaa 36224515  T

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