View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_6 (Length: 589)
Name: NF11482_high_6
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 367 - 587
Target Start/End: Original strand, 25657133 - 25657353
Alignment:
| Q |
367 |
tattattaaacctttctctgcatgacacgtgacatggtttctacaacgnnnnnnncacttgtttcaagctctgcaatagaagtcatctttaatgggtcgg |
466 |
Q |
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| T |
25657133 |
tattattaaacctttctctgcatgacacgtgacatggtttctacaatgtttttttcacttgtttcaagctctgcaatagaagtcatctttaatgggtcgg |
25657232 |
T |
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| Q |
467 |
gttcgtatatcctgagttcatccaccacaacattagaataattaattattggaaaaaataaattagaaaaactttggacaatcttaatacaaagattaat |
566 |
Q |
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| T |
25657233 |
gttcgtatatcctgagttcatccaccacaacattagaataattaattattggaaaaaataaattagaaaaactttggacaatcttaatacaaagattaat |
25657332 |
T |
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| Q |
567 |
catgaaccttctctgctcctc |
587 |
Q |
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|||||||||| |||| ||||| |
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| T |
25657333 |
catgaaccttatctgttcctc |
25657353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 25656936 - 25657056
Alignment:
| Q |
164 |
tgatagctgatgttaatttaaacatattttcatttaattacctgaatactagatggatcatacgaagatagttggttgttcaacaaaacttcctgcaacc |
263 |
Q |
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| T |
25656936 |
tgatagctgatgttaatttaaacatattttcatttaattacctgaatactagatggatcatacgaagatagttggttgttcaacaaaacttcctgcaacc |
25657035 |
T |
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| Q |
264 |
atgaatacacatgcatgtttt |
284 |
Q |
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| T |
25657036 |
atgaatacacatgcatgtttt |
25657056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 284
Target Start/End: Complemental strand, 33023959 - 33023852
Alignment:
| Q |
176 |
ttaatttaaacatattttcatttaattacctgaatactagatggatcatacgaagatagttggttgttcaacaaaacttcctgcaaccatgaatacacat |
275 |
Q |
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|||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||| |
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| T |
33023959 |
ttaatttaaaaatagtttc-tttaattacctgaatagctgatggatcatacgaagatagattgttgttcaacaactgttcctgcaaccatgaatgaacat |
33023861 |
T |
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| Q |
276 |
gcatgtttt |
284 |
Q |
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|||||||| |
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| T |
33023860 |
ccatgtttt |
33023852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 509
Target Start/End: Complemental strand, 33023770 - 33023635
Alignment:
| Q |
375 |
aacctttctctgcatgacacgtgacatggtttctacaacgnnnnnnncacttgtttcaagctctgcaatagaagtcatctttaatgggtcgggttcgtat |
474 |
Q |
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||||||||||| ||||||||| | || ||||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| |
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| T |
33023770 |
aacctttctctccatgacacgggccaaggtttctactacgtttttttcaccagtttcaagctctgctatagatgtcatctttaatgggtcgggttcatat |
33023671 |
T |
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| Q |
475 |
atcctgagttcatccaccac-aacattagaataatt |
509 |
Q |
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||||| ||| ||||||| | |||||||||| |||| |
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| T |
33023670 |
ttcctgtgtttatccaccccaaacattagaacaatt |
33023635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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