View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_7 (Length: 586)
Name: NF11482_high_7
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 23696915 - 23697466
Alignment:
| Q |
18 |
ttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtc |
117 |
Q |
| |
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|||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| ||| | |||| || | ||| || ||||| |||||| |
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| T |
23696915 |
ttagattcacaaaaattgtactgtccttttaatgattgttcagctatgttggtgaatgatgaagaggaagttgtaaccgtttctgagtgtcctcattgta |
23697014 |
T |
|
| Q |
118 |
atagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggggagcgagggagggaagatct |
217 |
Q |
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||||||| || ||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||||| |||| || |||||||||||| ||||||| |
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| T |
23697015 |
atagattattttgtgcacaatgtaaggtttcatggcactctggtgttgattgtagagagtttcaaagcttggaagatggcgagcgagggaggaaagatct |
23697114 |
T |
|
| Q |
218 |
aatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
23697115 |
aatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgagggatgtactcgcatttcatgcagg |
23697214 |
T |
|
| Q |
318 |
tatagacaattctcttttgttaagaattctacttttgcatttttattttgggtgcttgcttaaatattagttattctgctttgatttgtaagaaaaaatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23697215 |
tatagacaattctcttttgttaagaattctacttttgcatttttatttttggtgcttgcttaaatattagttattctgctttgatttgtaaaaaaaaatt |
23697314 |
T |
|
| Q |
418 |
tggcatattgatttcatccgcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattataagtgtgcaactggataga |
517 |
Q |
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| T |
23697315 |
tgtcatattgtttttatccgcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattataagtgtgcaactggataga |
23697414 |
T |
|
| Q |
518 |
aatggcatgacgagtgaaattgcatagcacaacgttacatcaattgcttgat |
569 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23697415 |
aattgcatgacgagtgaaattgcatagcacaacgttacatcaattgcttgat |
23697466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 23701017 - 23700682
Alignment:
| Q |
18 |
ttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23701017 |
ttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtc |
23700918 |
T |
|
| Q |
118 |
atagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggggagcgagggagggaagatct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
23700917 |
atagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggcgagcgagggatggaagatct |
23700818 |
T |
|
| Q |
218 |
aatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcagg |
317 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| || |||||||||||||||||| |
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| T |
23700817 |
aatggccatggaacttgcaaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattgtgggatgtactcgcatttcatgcagg |
23700718 |
T |
|
| Q |
318 |
tatagacaattctcttttgttaagaattctactttt |
353 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||| |
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| T |
23700717 |
tatattcaattctcttttgttaaaaattctactttt |
23700682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 23694784 - 23695057
Alignment:
| Q |
18 |
ttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694784 |
ttaggttcacagaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtc |
23694883 |
T |
|
| Q |
118 |
atagattgttctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacggggagcgagggagggaagatct |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| || |||||||||||||||||||| |
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| T |
23694884 |
atagattgttctgtgcacaatgtaaggtttcatggcacataggtgttgattgtaaagagtttctaagcttgaaagatggtgagcgagggagggaagatct |
23694983 |
T |
|
| Q |
218 |
aatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattg |
291 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
23694984 |
aatggccatggaacttgctaagaacaagagatggaaaagatgtccaaagtgtggcttctatgtggaaaaaattg |
23695057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 498
Target Start/End: Complemental strand, 23700648 - 23700587
Alignment:
| Q |
437 |
gcaggtgtggtaatcaattttgctatggatgtggatccacttggaatactgactcccattat |
498 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| || ||||||||| | | ||||||||| |
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| T |
23700648 |
gcaggtgtggcaatcaattttgctatggctgtggttctccttggaataatcagtcccattat |
23700587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 28 - 353
Target Start/End: Complemental strand, 8149150 - 8148820
Alignment:
| Q |
28 |
agaaattttattgtccttttaatgattgttcagctatgttgttgaatgatgaaaagggaattgtgactgcttcggaatgtccacattgtcatagattgtt |
127 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||| | | |||||| | ||||||||||||||||||||||| | || |
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| T |
8149150 |
agaaaatttattgtccttttaaggattgttcagctatgttggtgaatgatggaaatgaagttgtgagaattacggaatgtccacattgtcatagactatt |
8149051 |
T |
|
| Q |
128 |
ctgtgcacaatgtaaggtttcatggcacacaggtgttgattgtaaagtgtttcaaagcttgaaagacgg-ggagcgagggagg--gaagatctaatggcc |
224 |
Q |
| |
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||| ||||||||| | ||| |||||||||| | || ||||||| || |||||||| |||||| | || || ||||| ||| |||||||||||| |
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| T |
8149050 |
ctgcgcacaatgtcaagttccatggcacacggaagtcgattgtagagagtttcaaattttgaaaaaaggcggtccgaggaaggatttagatctaatggct |
8148951 |
T |
|
| Q |
225 |
atggaacttgctaagaacaagagatggaaaagatgtccaaagtgcagcttctatgtggagaaaattgaggggtgcactcgcatttcatgcaggtatagac |
324 |
Q |
| |
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|||||||||||||||| |||| ||||||||| ||||||| |||| |||||||||||| |||| | || || | || |||| |||||||||||||| |
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| T |
8148950 |
ctggaacttgctaagaaaaagaaatggaaaaggtgtccaagatgcaacttctatgtggaaaaaaaaggtggatgtaatcacattagatgcaggtatagac |
8148851 |
T |
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| Q |
325 |
a--attctcttttgttaagaattctactttt |
353 |
Q |
| |
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| ||| |||| ||||||||||||||||||| |
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| T |
8148850 |
aatattttcttatgttaagaattctactttt |
8148820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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