View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_high_8 (Length: 565)
Name: NF11482_high_8
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Complemental strand, 36940108 - 36939593
Alignment:
| Q |
16 |
gagatatacctatagagcttcagccccaagtcatttctcttagttaaggacatcttatccaagcttggcaaatgggcaggcagtcgaatcgaacctcatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36940108 |
gagatatacctatagagcttcagccccaagtcatttctcttagttaaggacatcttatccaagcttggcaaatgggcaggcagtcgaatagaacctcatt |
36940009 |
T |
|
| Q |
116 |
aaagaaaggaaactccttattcccaggccctcccaaagtctgccttgaagaggaagtttctattcaatctatagctatcaaataaatcacatatatattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36940008 |
aaagaaaggaaactccttattcccaggccctcccaaagtctgccttgaagaggaagtttctattcaatctatagctatcaaataaatcacatatatattc |
36939909 |
T |
|
| Q |
216 |
tcttgggaagaagagacacacacatgtggtaggaagggaagacagaaagaatagaattcatgatcaggttcatttcaattttcttcaaattattacaaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939908 |
tcttgggaagaagagacacacacatgtggtaagaagggaagacagaaagaatagaattcatgatcaggttcatttcaattttcttcaaattattacaaat |
36939809 |
T |
|
| Q |
316 |
atattccatccatttttgagcttctattgcacaatttgtccacgacactatcaaaatcattgaagcatatttagtcttgatatcaaatcccaagtgtttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939808 |
atattccatccatttttgagcttctattgcacaatttgtccacgacactatcaaaatcattgaagcatatttagtcttgatatcaaatcccaagtgtttc |
36939709 |
T |
|
| Q |
416 |
ctaatatgactaatcacaaaaatcttactctatcaaattttaagacaatatctacaaataatttctactctagaacctacatataattcaaggagtgtat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939708 |
ctaatatgactaatcacaaaaatcttactctatcaaattttaagacaatatctacaaataatttctactctagaacctacatataattcaaggagtgtat |
36939609 |
T |
|
| Q |
516 |
ctcctacgcatacatt |
531 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36939608 |
ctcctacgcatacatt |
36939593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University