View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_high_9 (Length: 554)
Name: NF11482_high_9
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 195 - 539
Target Start/End: Complemental strand, 14811675 - 14811332
Alignment:
| Q |
195 |
gttcgtagggcaacaagattcaggcaacaatcccatcctagtgtgttggccgcttaggacctttgttcttcgggcatttagtgtatgttattaccacttt |
294 |
Q |
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| T |
14811675 |
gttcgtagggcaacaagattcaggcaacaatcccatcctagtgtgttggccgcttaggacctttgttcttcgggcatttagtgtatgttatcaccacttt |
14811576 |
T |
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| Q |
295 |
caatgttgttgatagtgttaatggctcctttgccactggtaacaaaaagaggattatgcttaggttgggtacaagggttgtaatggatgatagctttctc |
394 |
Q |
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| T |
14811575 |
caatgttgttgatagtgttaatggctcctttgccactggtaacagaaagagcattatgcttaggttgggtacaagggttgtaatggatgatagctttctc |
14811476 |
T |
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| Q |
395 |
attcataagtatgggttgactttgcttcgctctgatgagatcaaaaggccacgttttgatcccgctcgattggttggtatctgtttcgtttttgtagtct |
494 |
Q |
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| T |
14811475 |
attcataagtatgggttgacttcgcttcgctctgatgagatcaaaaggccacgttttgatcccgctcggttggttggtatctgtttcgtttttgtagtct |
14811376 |
T |
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| Q |
495 |
ggtttgctttgtcttactgttcatttacattttatgtagtctctg |
539 |
Q |
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| T |
14811375 |
ggtttgctttgtcttactgtttatttaca-tttatttagtctctg |
14811332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 14811847 - 14811748
Alignment:
| Q |
24 |
gtaggtggtccgttgagaccagctttttccgtggttgtgttggtagcattgagctaattttgctcgacatagatgtgagttgatacgccatgacaaatta |
123 |
Q |
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|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
14811847 |
gtaggtggtccgttgagagcagctttttccatggtcgtgttggtagcattgagctaattttgctcgacatagatgtgagctgatacgccatgaaaaatta |
14811748 |
T |
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