View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_low_1 (Length: 819)
Name: NF11482_low_1
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 343 - 801
Target Start/End: Original strand, 42804853 - 42805311
Alignment:
| Q |
343 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
442 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
42804853 |
atataagtttattgccatttttcactaactgtcgcatataatttcaacatgaaagaacatgagaggatctattctcattgaagttaagttatgctttctt |
42804952 |
T |
|
| Q |
443 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42804953 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
42805052 |
T |
|
| Q |
543 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
642 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805053 |
tattcacaacgcatttgtttataatttttcagtatttcttggaccacaggatatcaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
42805152 |
T |
|
| Q |
643 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgttggttacaaattaatataatt |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42805153 |
accaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgttggttacaaattaatataatt |
42805252 |
T |
|
| Q |
743 |
tcatcatgattgtcgataaaagatttactaaaacagattgtaaaaggccaatgagctct |
801 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42805253 |
tcttcatgattgtcgatagaagatttactaaaacagattgtaaaaggccaatgagctct |
42805311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 343 - 804
Target Start/End: Original strand, 42762451 - 42762904
Alignment:
| Q |
343 |
atataagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| | |
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|
| T |
42762451 |
atataagtttattgccgtttttcactaactgtcacatataattttaacatgaaagagcatgagaggatccattctcattgaagtgaatttatgctttctt |
42762550 |
T |
|
| Q |
443 |
ctatgttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaatagcactatt |
542 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42762551 |
ctatgttactttggattgaagttttaatttcatttatgtcgtttttaggggttgaacctatcccgccttcataagatgccctgtcatgaatagcactatt |
42762650 |
T |
|
| Q |
543 |
tattcacaacgcatatgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacattgaaaatgttgtgtatgtcaacc |
642 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
42762651 |
tattcacaacgtatttgtttataatttttcagtatttcttggaccacaggatattaagagctttttgcaatttacaatgaaaatgctgtgtatgtcaact |
42762750 |
T |
|
| Q |
643 |
gccaaggatttgtgttgatgcccttaccattcattatatatttatatttttaatacatctactagaagtttgatgatgttggttacaaattaatataatt |
742 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42762751 |
gccaaggatttgtgttgatgcccttaccattta--------ttatatttttaatacatctactagaagtttgatgatgttggttacaaattaatataatt |
42762842 |
T |
|
| Q |
743 |
tcatcatgattgtcgataaaagatttactaaaacagattgtaaaaggccaatgagctctctg |
804 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42762843 |
tcttcatgattgtggatagaagatttactaaaacagattgtaaaatgccaatgagctctctg |
42762904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 42760852 - 42761156
Alignment:
| Q |
22 |
ccacagcggttttcaaccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42760852 |
ccacagcggttttcaaccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttc |
42760951 |
T |
|
| Q |
122 |
cgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtagga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42760952 |
cgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtagga |
42761051 |
T |
|
| Q |
222 |
aaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggggagattggtg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42761052 |
aaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggtgagattggtg |
42761151 |
T |
|
| Q |
322 |
atgct |
326 |
Q |
| |
|
||||| |
|
|
| T |
42761152 |
atgct |
42761156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 326
Target Start/End: Original strand, 42803254 - 42803558
Alignment:
| Q |
22 |
ccacagcggttttcaaccgcgttctcaatccctctacattcctctggaacactttcattagaacacattgtcaaagtagcttcttttctgatacaatttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42803254 |
ccacagcggttttcaaccgcgttctcaatccctctacattcctctggaacactttcattagaacccattgtcaaagtagcttcttttctgatacaatttc |
42803353 |
T |
|
| Q |
122 |
cgcttttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttccggtacgtgtaaggttttggtagga |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
42803354 |
cgcctttattcgcatgaaagcggaaggggctgtgcctgatagttacacttacccttctgtgattaaagcatgttctggtacgtgtaaggttttggtagga |
42803453 |
T |
|
| Q |
222 |
aaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatgcggggagattggtg |
321 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| || ||||| ||| |
|
|
| T |
42803454 |
aagtcggttcacgggtcggtgtttaggtgtggtttggatcaggatttgtttatgggtactactttgattgatatgtatggtaaatgtggacagattagtg |
42803553 |
T |
|
| Q |
322 |
atgct |
326 |
Q |
| |
|
||||| |
|
|
| T |
42803554 |
atgct |
42803558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 347 - 534
Target Start/End: Original strand, 33048811 - 33048988
Alignment:
| Q |
347 |
aagtttattgccgtttttcactaactgtcgcatataattttaacatgaaagaacatgagaggatccattctcattgaagttaagttatgctttcatctat |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33048811 |
aagtttattgccgtttttcactaactgtcgcatataattttaaca----------tgagaggatccattctcattgaagttaagttatgctttcttctat |
33048900 |
T |
|
| Q |
447 |
gttactttggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
534 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33048901 |
gttacttaggattgaggttttaatttcatttatgtcgtttttaggggttgaacctatcctgccttcataagatgccctgtcatgaata |
33048988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 6170821 - 6170723
Alignment:
| Q |
209 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
307 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||| || | ||||||||||||||||||| |||||||||| |||| |||| || |||||||||||||||| |
|
|
| T |
6170821 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttggatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6170723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 6250183 - 6250085
Alignment:
| Q |
209 |
ggttttggtaggaaaatcggttcatgggtcggtgtttaggtgtggtttggatcaggatttgtttgtgggtactactttggttgatatgtatggtaaatg |
307 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||| || | ||||||||| ||||||||| |||||||||| |||| |||| || |||||||||||||||| |
|
|
| T |
6250183 |
ggttatggttggaaaattggttcatgagtcggttttgaagtgtggtttcgatcaggatgtgtttgtgggaactagtttgatttatatgtatggtaaatg |
6250085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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