View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_12 (Length: 498)
Name: NF11482_low_12
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 48501847 - 48501382
Alignment:
| Q |
19 |
acaatatcaatatggatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgagtttgactcaccaccaaagttcgaacttgc |
118 |
Q |
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| T |
48501847 |
acaatatcaatatggatatttggtcatggatatctgaactccccaactcagtagagtggaggaattatgagtttgactcaccaccaaagttcgaacttgc |
48501748 |
T |
|
| Q |
119 |
tagagatggacaaaacgattcaactcgttctatttatctcaaagcagagcgaacttttgggtcagactcagaagccttagtaaccttcatggtattctta |
218 |
Q |
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| T |
48501747 |
tagagatggacataacgattcaactcgttctatttatctcaaagcagagcgaacttctgggtcagactcagaagccttagtaaccttcatggtattctta |
48501648 |
T |
|
| Q |
219 |
caaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaaccctaatttcctcccactccttctccaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501647 |
caaggcttccatccattcaacactcaaaaacctctttggatttccgagaaatgcacactctcttcagaaaaccctaatttcctcccactccttctccaac |
48501548 |
T |
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| Q |
319 |
tcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48501547 |
tcctccaagaaatcatatccaactcacccacagcgcacgatagcacttgccctagatcccagcttcaaaaactcaaaccagagcccattgcatggatcat |
48501448 |
T |
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| Q |
419 |
agactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcctttg |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48501447 |
agactcgcacacaccagaatctctctccattttcttcaaccttgttttcaccattcgtctcttttg |
48501382 |
T |
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