View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_15 (Length: 455)
Name: NF11482_low_15
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 46925929 - 46926363
Alignment:
| Q |
18 |
agtcttgctgcagttattactgttaagcccttcaaccattgttattgagcttcttgatgtgtttgttggagagttcacattcataccatgatgtgtttga |
117 |
Q |
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| T |
46925929 |
agtcttgctgcagttattactgttaagcccttcaaccattgttattgagcttcttgatgtgtttgtaggagagttcacattcataccatgatgtgtttga |
46926028 |
T |
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| Q |
118 |
ttttgagtttgaagatgagaaacatgtttagggttagaattgtaatagcccaaaagctggttcattggcttttgcaccattgaaacattaccaccaccat |
217 |
Q |
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| T |
46926029 |
ttttgagtttgaagatgagaaacatgtttagggttagaattgtaatagcccaaaagctggttcattggcttttgcaccattgaaacattaccaccaccat |
46926128 |
T |
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| Q |
218 |
tcataggagttggatttgaagcttgtggaagcagaaaagatgaagagtaagagttacttggagctactggtttaacatgattctgaacaaagtagataat |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926129 |
tcataggagttgaatttgaagcttgtggaagcagaaaagatgaagagtaagagttacttggagctactggtttaacatgattctgaacaaagtagataat |
46926228 |
T |
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| Q |
318 |
atcattgtaaagcttcttcatgtgagctaactcagacattaacatgttgttacttcttcttagtctttcattatcttcagaaagagcagtaacagaagta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46926229 |
atcattgtaaagcttcttcatgtgagctaactcagacattaacatgttgttacttcttcttagtctttcattgtcttcagaaagagcagtaacagaagta |
46926328 |
T |
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| Q |
418 |
ttgtagttgtttgttgctgttgtctgtgctcctcc |
452 |
Q |
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||||||||||||||||||||||| |||| |||||| |
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| T |
46926329 |
ttgtagttgtttgttgctgttgtttgtgttcctcc |
46926363 |
T |
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