View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_16 (Length: 455)
Name: NF11482_low_16
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 38766184 - 38765767
Alignment:
| Q |
13 |
agaagcaccgttacgnnnnnnntattcttcaatacaacgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatctacacg |
112 |
Q |
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| T |
38766184 |
agaagcaccgttacgaaaaaaatattcttcaatacaacgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatctacacg |
38766085 |
T |
|
| Q |
113 |
aagtaaaatatgtgttacattacatataattaatttcagcttatgaattaattaaagaagattaaggataccaccttgtcctcaaattgttccatgaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38766084 |
aagtaaaatatgtgttacattacatataattaatttcagcttatgaattaattaaagaagattaaggataccaccttgtcctcaaattgttccatgaaaa |
38765985 |
T |
|
| Q |
213 |
gatccattcctcttactaaagctagtacgttttcatgtgttaaaacaacgcctttaggatctccactagttccacttgtatacattattgtgcatatgtc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38765984 |
gatccattcctcttactaaagctagtacgttttcatgtgttaaaacaacgcctttaggatctccactagttccacttgtatacattattgtgcatatgtc |
38765885 |
T |
|
| Q |
313 |
atgagccaaaggaggattaatacttgacgggttttcttttccctgtaaggtacgtttcgtgttgatcataatataataatagagagagaaatagaagaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38765884 |
atgagccaaaggaggattaatacttgacgggttttcttttccctgtaaggtacgtttcgtgttgatcataat----------agagagaaatagaagaaa |
38765795 |
T |
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| Q |
413 |
cattataatgcatgtttggatatttttt |
440 |
Q |
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| T |
38765794 |
cattataatgcatgtttggatatttttt |
38765767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 44997739 - 44997872
Alignment:
| Q |
185 |
accttgtcctcaaattgttccatgaaaagatccattcctcttactaaagctagtac-gttttcatgtgttaaaacaacgcctttaggatctccactagtt |
283 |
Q |
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|||||||| ||||||||||||||||||| ||||||||| ||||| ||| |||| ||||||||| || |||||||| || | ||| |||||||| ||| |
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| T |
44997739 |
accttgtcttcaaattgttccatgaaaatatccattccccttacaaaata-agtaatgttttcatgagtcaaaacaacaccctgagggtctccacttgtt |
44997837 |
T |
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| Q |
284 |
ccacttgtatacattattgtgcatatgtcatgagc |
318 |
Q |
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|||||||||||||||||||| ||||| |||||||| |
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| T |
44997838 |
ccacttgtatacattattgtacatatatcatgagc |
44997872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 44997511 - 44997569
Alignment:
| Q |
50 |
cgatcaaggatgtgagctaaagggaggaaggataaatacacatcatccacagtcatcta |
108 |
Q |
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||||||||||| ||||| ||||| ||||| |||||||||||||| || ||||||||||| |
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| T |
44997511 |
cgatcaaggatatgagccaaaggaaggaaagataaatacacatcttcaacagtcatcta |
44997569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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