View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_18 (Length: 449)
Name: NF11482_low_18
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 3522793 - 3523129
Alignment:
| Q |
18 |
cattttgattgaattggtcgaacattaccaacactttccaccttgaggagacctcaaaagaggcttaaaaaattcacagttgaaaccattcgggcctgaa |
117 |
Q |
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| T |
3522793 |
cattttgattgaattgatccaacattaccaacactttccaccttgaggagacctcaaaaaaggcttaaaaaattcacagttgaaaccattcgggcctgaa |
3522892 |
T |
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| Q |
118 |
cttttgtttcctttggaattatatatggactaccttgaagatttcctcgtccaagannnnnnngaaagaagagtattttgaacctcattcaaagaagcaa |
217 |
Q |
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| T |
3522893 |
cttttgtttcctttggaattat----ggactaccttgatgatttcctcctccaagatttttttgaaagaagagtattttgaacctcattcaaagaagcaa |
3522988 |
T |
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| Q |
218 |
agattactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatggaagatgaag |
317 |
Q |
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| T |
3522989 |
agactactatgtcaaaagtaggtatttctcagttgacataagagaaaggtttagaaaaatacatgaagacctcttgtcttatagtcgatgaaagatgaag |
3523088 |
T |
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| Q |
318 |
tcatgaaccttctgatttgagaaccgaactagtttttgatg |
358 |
Q |
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| T |
3523089 |
tcatgaaccttctgatttgagaaccgaactagtttttgatg |
3523129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 3524357 - 3524419
Alignment:
| Q |
372 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
434 |
Q |
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| T |
3524357 |
gatgcaagcatgaaagaaagtcaagttagagtcaccctcgttgaaccacttcaccctccctct |
3524419 |
T |
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