View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_19 (Length: 447)
Name: NF11482_low_19
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 32 - 436
Target Start/End: Original strand, 17435419 - 17435823
Alignment:
| Q |
32 |
cgcaagtaaattgaggatgaccaaattaaatttttattcaaatattaatgttttgacaacaagnnnnnnngtttgcagacaaagcagtaaacatcacttc |
131 |
Q |
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| T |
17435419 |
cgcaagtaaattgaggatgaccaaattaaatatttattcaaatataaatgttttgacaacaattttttttgttttcagacaaagcaattaacatcacttc |
17435518 |
T |
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| Q |
132 |
aaattcacacactaatgcaaagatccaaattaaaatattgattgtatctaaggataagtgagacaaaaagtgctgagtactatgcaagtatatgatcaag |
231 |
Q |
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| T |
17435519 |
aaattcacacactaatgcaaagatccaaattaaaatattgattgtatctaaggataagtgagacaaaaagtgttgagtactatgcaagtatatgatcaag |
17435618 |
T |
|
| Q |
232 |
attggatatatgaaagaatattaatataaaatctgacaccaaattgaaattttgcgtcatatgaattgtaaaactgaagaaattctcagcaatacaagaa |
331 |
Q |
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| T |
17435619 |
attggatatatgaaaggatattaatataaaatctgacaccaaattgagattttgcgtcatatgaattgtaaaactgaagaaattctcagctatataacaa |
17435718 |
T |
|
| Q |
332 |
acaagagcatgtagaagagactgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaataattgagtgtgtcggtatta |
431 |
Q |
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| T |
17435719 |
acaagagcatgtagaagagattgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaataattgagtgtgtcggtatta |
17435818 |
T |
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| Q |
432 |
ttcat |
436 |
Q |
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| T |
17435819 |
ttcat |
17435823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 164 - 435
Target Start/End: Original strand, 17456615 - 17456897
Alignment:
| Q |
164 |
aaatattgattgtatctaaggataagtgagacaaaaagtgct-gagtactatgcaagtatatgatcaagattggatatatgaaagaatattaatataaaa |
262 |
Q |
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||||||||||| |||||| |||||||||| |||||||| | | |||| ||||||||||||||||| || | |||||||||||||||| | ||||||||| |
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| T |
17456615 |
aaatattgattatatctatggataagtgacacaaaaagggtttgagtgctatgcaagtatatgataaaaaatggatatatgaaagaaaac-aatataaaa |
17456713 |
T |
|
| Q |
263 |
tctgacaccaaattgaaattttgcgtcatatg-----------aattgtaaaactgaagaaattctcagcaatacaagaaacaagagcatgtagaagaga |
351 |
Q |
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| T |
17456714 |
tttgacatcaaattaagatttcgcatcatatgaaacgggtatgaattgtaaaactggagaaattctcagcaatacaagaaacaaaagcatgtagaagaga |
17456813 |
T |
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| Q |
352 |
ctgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaataattgagtgtgtcggtattattca |
435 |
Q |
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| T |
17456814 |
ttgtgtacctcaaaaagagagcctggaaacgacagagttaggctttgtttgacataaaataattgagtgtgttgatattattca |
17456897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 17456500 - 17456544
Alignment:
| Q |
32 |
cgcaagtaaattgaggatgaccaaattaaatttttattcaaatat |
76 |
Q |
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| T |
17456500 |
cgcaagtaaattgaaaatgaccgaattaaatatttattcaaatat |
17456544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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