View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_2 (Length: 713)

Name: NF11482_low_2
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_2
NF11482_low_2
[»] chr4 (1 HSPs)
chr4 (20-703)||(43746513-43747173)


Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 20 - 703
Target Start/End: Original strand, 43746513 - 43747173
Alignment:
Q  20 ttgatgccatattcagcatatcccagcatctatgtaacacgagtactccctaatggtcttacacataaagtaaagtaatatctagtgttgaagtagaact 119  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43746513 ttgatgccatattcagcatatcccagaatctatgtaacacgagaactccctaatggtcttacacataaagtaaagtaatatctagtgttgaagtagaact 43746612  T
Q  120 tgaaaaatgaacggaagatttagccttaagcaaagaatcttctttatactttctcaaagaaagataagacaaaagaagtgacatttcaaa-----atact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  43746613 tgaaaaatgaacggaagatttagccttaagcaaagaatcttctttatactttctcaaagaaagataagacaaaagaagtgacatttcaaatcaaaatact 43746712  T
Q  215 tctacaatcctcttgcatatgttccatagaaataaattatcgaagaaaaacattaaatgataaactcgattcccttgannnnnnnnnacggaaatagtca 314  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||                ||||||    
T  43746713 tctacaatcctcttgcatatgttccatagaaataaattatcaaagaaaaacattaaatgataaactcgattcccttgatttt------------tagtca 43746800  T
Q  315 cagacttttttgagactctaaatcttcacatcataattatgttacattagagcacctaaattgaaataattgcttcttggtagaaatatttcatgtcatc 414  Q
    |||||||||||||||||||||||||                 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43746801 cagacttttttgagactctaaatcta----------------tacattagagcacctaaattgaaataattgtttcttggtagaaatatttcatgtcatc 43746884  T
Q  415 aaccgtaagagatcataggatagttcgccgaatgacaagccttcctcggagcataatgagctttgtaggaataggaagaagaagaagaaatcaaaatgca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43746885 aaccgtaagagatcataggatagttcgccgaatgacaagccttcctcggagcataatgagctttgtaggaataggaagaagaagaagaaatcaaaatgca 43746984  T
Q  515 aactttccattacaatttttagaccctccacaaccacaaaattccttagcagctccagaagaatgggcttttcacgataattttgagcaacaatatggca 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43746985 aactttccattacaatttttagaccctccacaaccacaaaattccttagcagctccagaagaatgggcttttcacgataattttgagcaacaatatggca 43747084  T
Q  615 acaaacatcccttcttttacgcttgtcgtttcaatgaagctatgaagttagcagaacaagataaaaaatttgtgttcatgtatcttcat 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43747085 acaaacatcccttcttttacgcttgtcgtttcaatgaagctatgaagttagcagaacaagatcaaaaatttgtgttcatgtatcttcat 43747173  T

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