View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_21 (Length: 427)
Name: NF11482_low_21
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 71 - 417
Target Start/End: Complemental strand, 47281114 - 47280768
Alignment:
| Q |
71 |
cacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttgggaggatctgttttataatttt |
170 |
Q |
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| T |
47281114 |
cacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttggggggatctgttttataatttt |
47281015 |
T |
|
| Q |
171 |
cagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataaattgtttgatttcagtgttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281014 |
cagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataaattgtttgatttcagtgttg |
47280915 |
T |
|
| Q |
271 |
tctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattggaggagctaaggaacattt |
370 |
Q |
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| T |
47280914 |
tctgcacatggtgaaacggagctggtgatgaaggcaatttcccacggtgcccgtgattttctgctgaaacctgtgagattggaggagctaaggaacattt |
47280815 |
T |
|
| Q |
371 |
ggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtg |
417 |
Q |
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| T |
47280814 |
ggcagcatgtaattcggaataaggagtcccagtttgtttggtctgtg |
47280768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 75 - 389
Target Start/End: Complemental strand, 47275432 - 47275111
Alignment:
| Q |
75 |
tgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcat---aagtaagttgggaggatctgttttataattttc |
171 |
Q |
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| T |
47275432 |
tgcctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaagtgggg-ggatctgttctgtaatcttc |
47275334 |
T |
|
| Q |
172 |
agctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgtt--gtta---taaattgtttgatttcagt |
266 |
Q |
| |
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|| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | |||||| |||||||| |
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| T |
47275333 |
agttcttcatctttgctttgtttcttcattttcactctcatttattcatataattattaatcaatgattgtttggtgaacgtttgttgttttatttcagt |
47275234 |
T |
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| Q |
267 |
gttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattggaggagctaaggaac |
366 |
Q |
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| T |
47275233 |
gttgtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgagattacaggagctaaagacc |
47275134 |
T |
|
| Q |
367 |
atttggcagcatgtaattcggaa |
389 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47275133 |
atttggcagcatgtaattcggaa |
47275111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 398
Target Start/End: Complemental strand, 49061241 - 49060903
Alignment:
| Q |
70 |
acacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttgggaggatctgttttataattt |
169 |
Q |
| |
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||||||||| |||||||||||| | |||||||| |||||||| |||||||||||||| ||||| ||||||||||||| |||| ||||| | |||| | |
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| T |
49061241 |
acacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaatggaccttcccgtcataagtaagtgggga---tctgtcatgtaatct |
49061145 |
T |
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| Q |
170 |
tcagctcttcatctttgt--------tctgtttcttcattttcactctcatttatttatataattattaatcaatgat-----tgttgttataaattgtt |
256 |
Q |
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| ||| || || ||| | ||| ||| |||||||| ||| | |||||| ||| | || ||||||||||| || | ||||||| |||| |
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| T |
49061144 |
ttggctgttaatttttttcttctttttctatttattcattttgactattgtttattgatacgactactaatcaatgatacttttggttttataaaatgtt |
49061045 |
T |
|
| Q |
257 |
tgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattggagga |
356 |
Q |
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||||||||||||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
49061044 |
tgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatttcccatggtgcctgtgattatctgctgaaacctgtgagattagagga |
49060945 |
T |
|
| Q |
357 |
gctaaggaacatttggcagcatgtaattcggaataaggagtc |
398 |
Q |
| |
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||||| |||||||||||||||||||||| |||| ||| |||| |
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| T |
49060944 |
gctaaagaacatttggcagcatgtaattaggaagaagaagtc |
49060903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 383
Target Start/End: Original strand, 2893287 - 2893425
Alignment:
| Q |
245 |
ttataaattgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgt |
344 |
Q |
| |
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||||||| ||||||||||||||||| ||||| ||| ||| || || |||||||||| | |||| |||||||| ||||||| ||||||||||||||| |
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| T |
2893287 |
ttataaagtgtttgatttcagtgttttctgcgaatgatgatccgaagatggtgatgaaaggaattgaacacggtgcttgtgattatctgctgaaacctgt |
2893386 |
T |
|
| Q |
345 |
gagattggaggagctaaggaacatttggcagcatgtaat |
383 |
Q |
| |
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||| || | ||| || || |||||||||||||||||| |
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| T |
2893387 |
tagactgaaagaggtacagatcatttggcagcatgtaat |
2893425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 2888560 - 2888633
Alignment:
| Q |
74 |
atgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
147 |
Q |
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||||| |||||||||||| | ||||| || || ||||| |||||||| |||||| | ||||||||||||||||| |
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| T |
2888560 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggatttacctgtcataagtaagtt |
2888633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 2904663 - 2904736
Alignment:
| Q |
74 |
atgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
147 |
Q |
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| T |
2904663 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaagtt |
2904736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 34316047 - 34316118
Alignment:
| Q |
72 |
acatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagta |
143 |
Q |
| |
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| T |
34316047 |
acatgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcattagta |
34316118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 48870519 - 48870446
Alignment:
| Q |
74 |
atgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
147 |
Q |
| |
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||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || ||||||||| ||||||| |
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| T |
48870519 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataggtaagtt |
48870446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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