View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_22 (Length: 421)

Name: NF11482_low_22
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_22
NF11482_low_22
[»] chr5 (5 HSPs)
chr5 (238-404)||(40579852-40580018)
chr5 (21-200)||(40579583-40579762)
chr5 (119-201)||(12974251-12974333)
chr5 (72-173)||(38274991-38275092)
chr5 (128-192)||(17537469-17537537)
[»] chr1 (6 HSPs)
chr1 (119-202)||(25948200-25948283)
chr1 (118-200)||(47490278-47490360)
chr1 (119-200)||(5298751-5298832)
chr1 (128-192)||(2736182-2736247)
chr1 (128-192)||(39959850-39959915)
chr1 (128-192)||(1076197-1076262)
[»] chr8 (1 HSPs)
chr8 (118-200)||(33802583-33802665)
[»] chr7 (10 HSPs)
chr7 (120-202)||(42617401-42617483)
chr7 (128-192)||(28545504-28545569)
chr7 (128-192)||(28549919-28549984)
chr7 (128-192)||(28556087-28556152)
chr7 (128-192)||(47958511-47958576)
chr7 (128-192)||(48253863-48253928)
chr7 (128-192)||(24142897-24142962)
chr7 (139-202)||(36977669-36977732)
chr7 (128-191)||(2415883-2415947)
chr7 (147-192)||(46961385-46961430)
[»] chr3 (5 HSPs)
chr3 (119-200)||(42085055-42085136)
chr3 (128-192)||(21127742-21127807)
chr3 (128-192)||(43291871-43291936)
chr3 (120-202)||(34935729-34935811)
chr3 (238-290)||(19851584-19851636)
[»] scaffold0648 (1 HSPs)
scaffold0648 (118-202)||(7743-7827)
[»] chr4 (7 HSPs)
chr4 (118-202)||(43930108-43930192)
chr4 (128-192)||(33075804-33075869)
chr4 (128-191)||(55899070-55899134)
chr4 (128-192)||(228867-228935)
chr4 (128-192)||(240412-240480)
chr4 (138-188)||(42678844-42678894)
chr4 (128-192)||(47819298-47819366)
[»] chr2 (1 HSPs)
chr2 (128-192)||(36011894-36011959)
[»] chr6 (1 HSPs)
chr6 (128-191)||(30809870-30809934)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 238 - 404
Target Start/End: Original strand, 40579852 - 40580018
Alignment:
Q  238 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaatcacaccaattgagaaataaactaattaggtagctcaaccctttatta 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40579852 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaatcacaccaattgagaaataaactaattaggtagctcatccctttatta 40579951  T
Q  338 gtgttctatttaatgatttggaaatggacaaattggattacctgcactcaaatttttgtagaaactt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40579952 gtgttctatttaatgatttggaaatggacaaattggattacctgcactcaaatttttgtagaaactt 40580018  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 40579583 - 40579762
Alignment:
Q  21 gtgagttaaaatattttaattaannnnnnnnncttgaggggattaaatatatattgtttcttactatcctatcatttgtcttacaaaaataacatagcaa 120  Q
    |||||||||||||||||||||||         ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  40579583 gtgagttaaaatattttaattaatttttttttcttgaggggattaaatatatattgtttgttactatcccatcatttgtcttacaaatataacatagcaa 40579682  T
Q  121 gacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40579683 gacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 40579762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 12974251 - 12974333
Alignment:
Q  119 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12974251 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcat 12974333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 38275092 - 38274991
Alignment:
Q  72 tattgtttcttactatcctatcatttgtcttacaaaaataacatagcaagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaa 171  Q
    |||||||| ||| | ||| || |||||||||| |||   |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38275092 tattgtttgttattgtcccatgatttgtcttataaattgaacacaacaagacagtttggccgagtggtctacggcgccagatttaggctctggtccgaaa 38274993  T
Q  172 gg 173  Q
    ||    
T  38274992 gg 38274991  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 17537469 - 17537537
Alignment:
Q  128 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 192  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  17537469 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 17537537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 25948200 - 25948283
Alignment:
Q  119 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25948200 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcatt 25948283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 47490360 - 47490278
Alignment:
Q  118 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47490360 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 47490278  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 5298751 - 5298832
Alignment:
Q  119 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5298751 aagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtca 5298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 2736182 - 2736247
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  2736182 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 2736247  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 39959850 - 39959915
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  39959850 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 39959915  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 1076197 - 1076262
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  1076197 tggccgagttggtctaaggcgtcagattaaggttctggtccgaaagggcgtgggttcaaatcccac 1076262  T

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Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 33802665 - 33802583
Alignment:
Q  118 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33802665 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 33802583  T

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Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 42617483 - 42617401
Alignment:
Q  120 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42617483 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtcatt 42617401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 28545504 - 28545569
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28545504 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28545569  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 28549919 - 28549984
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28549919 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28549984  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 28556087 - 28556152
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  28556087 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 28556152  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 47958576 - 47958511
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  47958576 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 47958511  T

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Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 48253863 - 48253928
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48253863 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 48253928  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 24142962 - 24142897
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||| |||| |||||||||||||||||    
T  24142962 tggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccac 24142897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 36977732 - 36977669
Alignment:
Q  139 tctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    |||||||||  ||||||||||||||| | |||||||| |||||||||||||||| | |||||||    
T  36977732 tctaaggcgttagatttaggctctggcctgaaagggcatgggttcaaatcccactgtagtcatt 36977669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 2415883 - 2415947
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 191  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  2415883 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 2415947  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 46961385 - 46961430
Alignment:
Q  147 gccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    |||||||| ||| ||||||| |||| ||||||||||||||||||||    
T  46961385 gccagattaaggttctggtctgaaaaggcgtgggttcaaatcccac 46961430  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 42085136 - 42085055
Alignment:
Q  119 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42085136 aagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagctgtca 42085055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 21127807 - 21127742
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  21127807 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 21127742  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 43291936 - 43291871
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43291936 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 43291871  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 34935729 - 34935811
Alignment:
Q  120 agacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    |||| |||||||| |||||||||||||  ||||||||||||| |||  ||||||||||||||||||||| |||||| ||||||    
T  34935729 agacggtttggccaagtggtctaaggcatcagatttaggctccggtttgaaagggcgtgggttcaaatctcacagccgtcatt 34935811  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 19851584 - 19851636
Alignment:
Q  238 aatatagcaagtaccttagtggtgtacatgattgtcctatttatagagacaat 290  Q
    |||||||||||| ||| |||||| | ||| ||||||||||||||| |||||||    
T  19851584 aatatagcaagtgcctaagtggtttgcataattgtcctatttataaagacaat 19851636  T

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Target: scaffold0648 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 7827 - 7743
Alignment:
Q  118 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7827 caagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtcatt 7743  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 43930192 - 43930108
Alignment:
Q  118 caagacagtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagcagtcatt 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43930192 caagacggtttggccgagtggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccacagccgtcatt 43930108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 33075804 - 33075869
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  33075804 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 33075869  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 55899134 - 55899070
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 191  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  55899134 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 228867 - 228935
Alignment:
Q  128 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 192  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  228867 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 228935  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 240412 - 240480
Alignment:
Q  128 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 192  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  240412 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 240480  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 42678894 - 42678844
Alignment:
Q  138 gtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatc 188  Q
    ||||||||||||||||| ||| ||| |||||||||||||||  ||||||||    
T  42678894 gtctaaggcgccagattaaggttctcgtccgaaagggcgtgaattcaaatc 42678844  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 47819366 - 47819298
Alignment:
Q  128 tggccgagtggtctaaggcgccagatttaggctctggtc--cgaa--agggcgtgggttcaaatcccac 192  Q
    ||||||||||||||||||||||||| | | | |||||||  ||||  ||||||||||||||||||||||    
T  47819366 tggccgagtggtctaaggcgccagactcaagttctggtcttcgaaagagggcgtgggttcaaatcccac 47819298  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 36011894 - 36011959
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 192  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  36011894 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccac 36011959  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 30809934 - 30809870
Alignment:
Q  128 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatccca 191  Q
    ||||||||| ||||||||||||||| || |||  ||||||||||||||| ||||||| |||||||    
T  30809934 tggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

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