View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_29 (Length: 373)
Name: NF11482_low_29
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 19749375 - 19749035
Alignment:
| Q |
18 |
ctttaatcaccgtaatatttccttgaacccacttggattggtataataatgttgccttgagaacatatagtatgtttctttttaagaatttacgttcgat |
117 |
Q |
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| T |
19749375 |
ctttaaccaccgtaatatttccttgaacccacttggattggtataatgatgttgctttgagaccatatagtgtgtttcttcttaagaatttaggttcgat |
19749276 |
T |
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| Q |
118 |
tctcttcaaaatcaatttagatgatttaatttaacttgttaaataaacatttaatattcccatgttttaaatgtaataatagaaaaagatagaaggatat |
217 |
Q |
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| T |
19749275 |
tctcttcgatatcaatttagatgatttaatttaacttcttaaataaacatttaatattcccatgttttaaatgtaataatagaaaaagatagaaggatat |
19749176 |
T |
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| Q |
218 |
gattaattgagaatataatttttctaagatgttctactcttttgcaagggtgagattaattgagaatattgattgcacggcggcttaatgatgttaatgc |
317 |
Q |
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| T |
19749175 |
ga------gagaatataatttttctaagatgttttactcttttgcaagggtgagattaattgagaatattgttggcacggcggcttaatgatgttaatgc |
19749082 |
T |
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| Q |
318 |
cggctgctaatattaatgatgctggaacggacggtgcagattcttct |
364 |
Q |
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| T |
19749081 |
cggctgctaatattaatgatgctggaacggacggtgcagattcttct |
19749035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 19790431 - 19790771
Alignment:
| Q |
18 |
ctttaatcaccgtaatatttccttgaacccacttggattggtataataatgttgccttgagaacatatagtatgtttctttttaagaatttacgttcgat |
117 |
Q |
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| T |
19790431 |
ctttaaccaccgtaatatttccttgaacccacttggattggtataatgatgttgctttgagaccatatagtgtgtttcttcttaagaatttaggttcgat |
19790530 |
T |
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| Q |
118 |
tctcttcaaaatcaatttagatgatttaatttaacttgttaaataaacatttaatattcccatgttttaaatgtaataatagaaaaagatagaaggatat |
217 |
Q |
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| T |
19790531 |
tctcttcgatatcaatttagatgatttaatttaacttcttaaataaacatttaatattcccatgttttaaatgtaataatagaaaaagatagaaggatat |
19790630 |
T |
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| Q |
218 |
gattaattgagaatataatttttctaagatgttctactcttttgcaagggtgagattaattgagaatattgattgcacggcggcttaatgatgttaatgc |
317 |
Q |
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| T |
19790631 |
ga------gagaatataatttttctaagatgttttactcttttgcaagggtgagattaattgagaatattgttggcacggcggcttaatgatgttaatgc |
19790724 |
T |
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| Q |
318 |
cggctgctaatattaatgatgctggaacggacggtgcagattcttct |
364 |
Q |
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| T |
19790725 |
cggctgctaatattaatgatgctggaacggacggtgcagattcttct |
19790771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 19681030 - 19680942
Alignment:
| Q |
276 |
attgagaatattgattgcacggcggcttaatgatgttaatgccggctgctaatattaatgatgctggaacggacggtgcagattcttct |
364 |
Q |
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| T |
19681030 |
attgagaatattgatggcacggcggcttaatgatgttaatgccggctgctaatattaatgatgctggaacggacggtgcatattcttct |
19680942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 19681176 - 19681093
Alignment:
| Q |
166 |
atttaatattcccatgttttaaatgtaataatagaaaaagatagaaggatatgattaattgagaatataatttttctaagatgttctactc |
256 |
Q |
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| T |
19681176 |
atttaatattcccatgttttaaatgaaataatagaaaaggatataaggatgaga-------ggaatataatttttctaagatgttctactc |
19681093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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