View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_30 (Length: 367)

Name: NF11482_low_30
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_30
NF11482_low_30
[»] chr1 (4 HSPs)
chr1 (1-357)||(17052493-17052849)
chr1 (107-347)||(41581311-41581553)
chr1 (262-296)||(17052470-17052504)
chr1 (250-294)||(13398134-13398178)
[»] chr8 (1 HSPs)
chr8 (107-347)||(25234672-25234914)
[»] chr5 (2 HSPs)
chr5 (130-347)||(17713291-17713504)
chr5 (245-347)||(29634262-29634364)
[»] chr7 (1 HSPs)
chr7 (101-347)||(14616713-14616955)
[»] chr4 (1 HSPs)
chr4 (245-347)||(12272474-12272576)
[»] chr6 (1 HSPs)
chr6 (107-180)||(9290269-9290342)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 17052849 - 17052493
Alignment:
Q  1 ttagatggtatcatatattcatcttctggaaaccttgaatcgattcaaatctatttctatgaaatttgaattggtttaaatatatgtctatgtaactttc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17052849 ttagatggtatcatatattcatcttctgaaaaccttgaatcgattcaaatctatttctatgaaatttgaattggtttaaatatatgtctatgtaactttc 17052750  T
Q  101 aatcgtttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcagatttttatttttacactatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17052749 aatcgtttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcatatttttatttttacactatt 17052650  T
Q  201 ggatcgattcacatatatcataatacgattcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcac 300  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17052649 ggatcgattcacatatatcatgatacaattcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcac 17052550  T
Q  301 ccactcattttctcacttatagaatcaatttccaaaaacactctaaaacttgttctt 357  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17052549 ccactcattttctcacttatagaatcaatttccaaaaacactgtaaaacttgttctt 17052493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 347
Target Start/End: Complemental strand, 41581553 - 41581311
Alignment:
Q  107 ttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcagattttt-atttttacacta-ttggat 204  Q
    |||||||||||| ||  | || ||||||||||||| || |||||||| |||||||||||| |||||   || |||||||| ||| |||||||| ||| ||    
T  41581553 ttcattcttcatctgataatgttttgaatcgattcgaagttcttgaccttcgtgtcaatcgtcatagttttaagatttttcattgttacactaattgtat 41581454  T
Q  205 cgattcacatatatcataatacgattcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcacccac 304  Q
    ||||||||| ||    | || | |||||||||| |||||  |||||||||||||||||| |||| || |||| ||||||| |||||||||| ||||  ||    
T  41581453 cgattcacacatcatgtgattccattcaagtttcttttttaagtgttattttgaggcaatcttgctcctttcactcacacatatatataccttcacttac 41581354  T
Q  305 tcattttctcacttatagaatcaatttccaaaaacactctaaa 347  Q
    ||||||||||||| ||||||| | ||| |||||||||||||||    
T  41581353 tcattttctcactcatagaattagttttcaaaaacactctaaa 41581311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 17052504 - 17052470
Alignment:
Q  262 aaacttgttcttttctctcacacctatatatacca 296  Q
    ||||||||||||| |||||||||||||||||||||    
T  17052504 aaacttgttctttactctcacacctatatatacca 17052470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 13398134 - 13398178
Alignment:
Q  250 ttattttgaggcaaacttgttcttttctctcacacctatatatac 294  Q
    |||||||||| ||||||||||| | |||||| |||||||||||||    
T  13398134 ttattttgagccaaacttgttcatatctctctcacctatatatac 13398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 347
Target Start/End: Original strand, 25234672 - 25234914
Alignment:
Q  107 ttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcagatttttatttttacacta-ttggatc 205  Q
    |||||||||||| || || || |||||||||||||||| |||||||| |||| ||||||| | ||  | || ||||||| |||||| ||||| ||| |||    
T  25234672 ttcattcttcatttgaaaatgctttgaatcgattcaaagttcttgactttcgagtcaatcattatggcttttagattttcatttttgcactaattgaatc 25234771  T
Q  206 gattcacatatatcataatacgattcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcacccact 305  Q
    |||| ||| || |  | ||| ||||||||||   ||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||| ||||||||     
T  25234772 gatttacaaatgttgtgatatgattcaagttcagttttctagtgttattttgaggaaaacttgttcttttcacccacacttatatataccttcacccaca 25234871  T
Q  306 ca-ttttctcacttatagaatcaatttccaaaaacactctaaa 347  Q
    || |||| ||||| ||| ||  ||||| |||||||||||||||    
T  25234872 catttttttcactcatataaataatttgcaaaaacactctaaa 25234914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 347
Target Start/End: Original strand, 17713291 - 17713504
Alignment:
Q  130 ttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcagatttttatttttacacta-ttggatcgattcacatatatcataatacga 228  Q
    ||||||| ||||||  |||||||| |||||||||||||||||| ||| |||||||  | |||||||||| ||| |||| ||||    |  ||| ||  ||    
T  17713291 ttgaatcaattcaatgttcttgaccttcgtgtcaatcttcatagcatccagatttccaattttacactaattgaatcggttcatgcttcgcatgatttga 17713390  T
Q  229 ttcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcacccactcattttctcacttatagaatcaa 328  Q
    |||||| | || ||| |||||||||||||||| ||||||  || |||| |||||||||| ||||| |||    |||||||||||||||  ||||||||||    
T  17713391 ttcaagctcgtatttttagtgttattttgaggaaaactttctcctttcactcacacctaaatata-cat----cactcattttctcacccatagaatcaa 17713485  T
Q  329 tttccaaaaacactctaaa 347  Q
    ||| |||||||||| ||||    
T  17713486 ttttcaaaaacactataaa 17713504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 29634364 - 29634262
Alignment:
Q  245 tagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcacccactcattttctcacttatagaatcaatttccaaaaacactct 344  Q
    |||||||||||||||| ||||||| || ||||  | |||| |||||||||| |||  |||| ||||||||||| ||||||||||||| | || |||||||    
T  29634364 tagtgttattttgaggaaaacttgctcatttcatttacacttatatataccttcagacactgattttctcactcatagaatcaatttgcgaacacactct 29634265  T
Q  345 aaa 347  Q
    |||    
T  29634264 aaa 29634262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 347
Target Start/End: Complemental strand, 14616955 - 14616713
Alignment:
Q  101 aatcgtttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcagatttttatttttacact-at 199  Q
    ||||| |||||||||||| || || |   ||||||| ||||||  |||||||| |||||||||||||||||| ||| |||||||  | ||||||||| ||    
T  14616955 aatcgattcattcttcatctgaaacttgcttgaatcaattcaatgttcttgaccttcgtgtcaatcttcatagcatccagatttccaattttacactaat 14616856  T
Q  200 tggatcgattcacatatatcataatacgattcaagtttgtttttctagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatca 299  Q
    || |||| ||||    |  ||| ||  |||||| | | || ||| |||||||||||||||| ||||||  || |||| |||||||||| ||||| |||      
T  14616855 tgaatcggttcatgcttcacatgatttgattcatgctcgtatttttagtgttattttgagggaaactttctcctttcactcacacctaaatata-cat-- 14616759  T
Q  300 cccactcattttctcacttatagaatcaatttccaaaaacactctaaa 347  Q
      || ||||||||||||  ||||||||||||| |||||||||| ||||    
T  14616758 --cagtcattttctcacccatagaatcaattttcaaaaacactataaa 14616713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 347
Target Start/End: Original strand, 12272474 - 12272576
Alignment:
Q  245 tagtgttattttgaggcaaacttgttcttttctctcacacctatatataccatcacccactcattttctcacttatagaatcaatttccaaaaacactct 344  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||     |  ||||||||| ||||| | ||||||||||||| ||||| ||||||    
T  12272474 tagtgttattttgagcccaacttgttcttttccctcacacctatatatggttgcctccactcattctctcattcatagaatcaatttgcaaaatcactct 12272573  T
Q  345 aaa 347  Q
    |||    
T  12272574 aaa 12272576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 9290269 - 9290342
Alignment:
Q  107 ttcattcttcatatggaattgatttgaatcgattcaaaattcttgacattcgtgtcaatcttcatatcattcag 180  Q
    |||||| ||||| || ||||| |||||||||||||||| |||||||||||||| ||||||||| || |||||||    
T  9290269 ttcattgttcatctgaaattgctttgaatcgattcaaagttcttgacattcgtctcaatcttcgtagcattcag 9290342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University