View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_31 (Length: 366)
Name: NF11482_low_31
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 1702672 - 1702322
Alignment:
| Q |
16 |
gtgtagggataagtgatgagtttgaattttgaggagaaggtgaaggaataataggatggctaaggtgttgaataataagaggatgatgagaaggaaagtg |
115 |
Q |
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| T |
1702672 |
gtgtagggataagtgatgagtttgaattttgaggagaaggtggaggaataataggatggttaaggtgttgaataataagaggatgatgagaaggaaagtg |
1702573 |
T |
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| Q |
116 |
cttgttagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaattg-aaagagtgactcatgaaaggtgacgtgtctt |
214 |
Q |
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| T |
1702572 |
tttgctagtgtttgagtttgaatttaaaatagaagacgtggacgaggcataaagattcaataaaaatggaaagagtgactcatgaaaggtgacgtgtctt |
1702473 |
T |
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| Q |
215 |
gagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagaatagccaaagaaaacacatggcatgcttcgattggataact |
314 |
Q |
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| T |
1702472 |
gagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttgtgtagagtagccaaagaaaacacatggcatgcttcgattggataact |
1702373 |
T |
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| Q |
315 |
tattttgagagtatggtcgaagccatgggtagcacagatatccaaagactc |
365 |
Q |
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| T |
1702372 |
tattttgagagtatggtcgaagccatgggtagcacagacatccaaagactc |
1702322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
209 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
267 |
Q |
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| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
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