View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_33 (Length: 358)
Name: NF11482_low_33
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 1916337 - 1916672
Alignment:
| Q |
18 |
acatgaaatttgaagtctactaaagagtgtctgaaaaaccaagtctagctgtgagggatggacagaagatgctgttacaaagatttgctaccttttactt |
117 |
Q |
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| T |
1916337 |
acatgaaatttgaagtgtactaaagagtgtctgaaaaaccaagtctagctgtgagggatggacagaagatgctgttacaaagatttgctaccttttactt |
1916436 |
T |
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| Q |
118 |
ctcttgttggcaatgaatgcatgattgttggtgtataaactttgttcaaagtagctactttgcaaggattgagtaactatgtttttattgcttactctta |
217 |
Q |
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| T |
1916437 |
ctcttgttggcaatgaatgcatgattgttggtgtatacactttgttcaaagtagctactttgcaaggattgagtaactatgtttttattgcttactctta |
1916536 |
T |
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| Q |
218 |
tactgtttcaactattgtccttcttcctgtatattttttctatacaaggtttgtattattacaaatcatatgcttacatatttatgtatataacttagct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1916537 |
tactgtttcaactattgtccttcttcctgtatattttttctatacaaggtttgtattattacaaatcatatgcttacgtatttatgtatataacttagct |
1916636 |
T |
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| Q |
318 |
taaacacttgattaatcattgttttttcatctctct |
353 |
Q |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
1916637 |
tatacacttgattaatcattgttttttcatctctct |
1916672 |
T |
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