View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_34 (Length: 355)

Name: NF11482_low_34
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_34
NF11482_low_34
[»] chr7 (17 HSPs)
chr7 (167-267)||(22644002-22644104)
chr7 (179-265)||(3632825-3632911)
chr7 (179-267)||(33614224-33614312)
chr7 (306-348)||(22643921-22643963)
chr7 (306-353)||(48402563-48402610)
chr7 (306-348)||(2430597-2430639)
chr7 (306-348)||(33614143-33614185)
chr7 (307-348)||(14238761-14238802)
chr7 (190-251)||(40236670-40236730)
chr7 (307-355)||(32277520-32277568)
chr7 (304-355)||(40091062-40091113)
chr7 (95-145)||(3632712-3632762)
chr7 (306-348)||(37031267-37031309)
chr7 (306-348)||(38478778-38478820)
chr7 (306-348)||(46290485-46290527)
chr7 (320-352)||(3632965-3632997)
chr7 (306-346)||(11749207-11749247)
[»] chr4 (13 HSPs)
chr4 (179-267)||(52457511-52457599)
chr4 (167-267)||(34412866-34412967)
chr4 (62-149)||(34412751-34412837)
chr4 (179-267)||(35106077-35106165)
chr4 (306-354)||(34413006-34413054)
chr4 (306-348)||(32208319-32208361)
chr4 (95-145)||(35105968-35106018)
chr4 (306-355)||(44937072-44937121)
chr4 (81-145)||(52457666-52457730)
chr4 (306-348)||(6329377-6329419)
chr4 (306-348)||(53448031-53448073)
chr4 (306-348)||(56052669-56052711)
chr4 (304-348)||(34841067-34841111)
[»] scaffold0287 (3 HSPs)
scaffold0287 (179-265)||(13174-13260)
scaffold0287 (95-145)||(13323-13373)
scaffold0287 (320-352)||(13088-13120)
[»] chr1 (14 HSPs)
chr1 (179-267)||(38674315-38674404)
chr1 (306-348)||(16660017-16660059)
chr1 (306-355)||(43360327-43360376)
chr1 (304-348)||(4851384-4851428)
chr1 (307-348)||(17150947-17150988)
chr1 (306-355)||(23201945-23201994)
chr1 (311-348)||(38674233-38674270)
chr1 (304-348)||(741151-741195)
chr1 (304-348)||(8170390-8170434)
chr1 (307-355)||(30724644-30724692)
chr1 (306-348)||(19067294-19067336)
chr1 (306-348)||(19115184-19115226)
chr1 (304-337)||(14591504-14591537)
chr1 (304-348)||(41318463-41318507)
[»] chr8 (13 HSPs)
chr8 (203-267)||(22914392-22914457)
chr8 (203-267)||(10405794-10405858)
chr8 (306-348)||(22914475-22914517)
chr8 (306-348)||(43638443-43638485)
chr8 (306-348)||(14930798-14930840)
chr8 (306-348)||(18754021-18754063)
chr8 (306-348)||(24100677-24100719)
chr8 (306-348)||(27631555-27631597)
chr8 (306-348)||(28860421-28860463)
chr8 (306-348)||(34649643-34649685)
chr8 (306-355)||(33099632-33099681)
chr8 (306-352)||(38783689-38783737)
chr8 (306-354)||(37513309-37513357)
[»] chr3 (15 HSPs)
chr3 (203-267)||(24695855-24695920)
chr3 (306-348)||(27516260-27516302)
chr3 (307-348)||(4986950-4986991)
chr3 (304-352)||(34672667-34672715)
chr3 (306-353)||(36040383-36040430)
chr3 (306-352)||(5175657-5175703)
chr3 (306-348)||(13848850-13848892)
chr3 (306-355)||(40687019-40687068)
chr3 (316-355)||(52253845-52253884)
chr3 (306-348)||(24929159-24929201)
chr3 (306-336)||(44430089-44430119)
chr3 (203-267)||(45059197-45059262)
chr3 (304-348)||(20497365-20497409)
chr3 (304-348)||(39692582-39692626)
chr3 (304-348)||(49952195-49952239)
[»] chr5 (9 HSPs)
chr5 (306-348)||(28905570-28905612)
chr5 (306-348)||(28941965-28942007)
chr5 (306-348)||(29801719-29801761)
chr5 (307-355)||(38923949-38923997)
chr5 (306-348)||(11447261-11447303)
chr5 (306-348)||(18515695-18515737)
chr5 (306-348)||(32657903-32657945)
chr5 (306-348)||(35468050-35468092)
chr5 (306-348)||(38503575-38503617)
[»] scaffold0091 (1 HSPs)
scaffold0091 (304-346)||(15517-15559)
[»] chr2 (3 HSPs)
chr2 (306-355)||(362992-363041)
chr2 (306-355)||(4843403-4843452)
chr2 (306-355)||(18601300-18601349)
[»] scaffold0366 (1 HSPs)
scaffold0366 (304-352)||(10039-10087)
[»] chr6 (1 HSPs)
chr6 (304-352)||(7341250-7341298)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 167 - 267
Target Start/End: Complemental strand, 22644104 - 22644002
Alignment:
Q  167 tcaacaatttaa--taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 264  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22644104 tcaacaatttaaattaaaaattggattaagttatttaataaattaatttttattgaaggtttattagttaggggtattttggtacttctaaaaataatca 22644005  T
Q  265 aca 267  Q
    |||    
T  22644004 aca 22644002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 3632825 - 3632911
Alignment:
Q  179 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaa 265  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  3632825 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaa 3632911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 33614312 - 33614224
Alignment:
Q  179 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 267  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||  |||||| |||||||||| ||||||||||    
T  33614312 taaaaattggattaaattatttaataaattaattttgattgaaggtttattaattatgggtattttgctacttctaaagataatcaaca 33614224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 22643963 - 22643921
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  22643963 caaacaatacatcaaatctactctatttctcatctttttctct 22643921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 48402610 - 48402563
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttcc 353  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  48402610 caaacaatacatcaaatctactctatttctcacctttttctctcttcc 48402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 2430639 - 2430597
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  2430639 caaacaatacatcaaatcttctctatttctcatctttttctct 2430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 33614185 - 33614143
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  33614185 caaacaatacctcaaatctactctatttctcatctttttctct 33614143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 14238761 - 14238802
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  14238761 aaacaatatatcaaatctactatatttctcatctatttctct 14238802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 40236730 - 40236670
Alignment:
Q  190 ttaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtactt 251  Q
    ||||||||||||| ||||||||||||||||||| ||| ||| || ||| |||||||||||||    
T  40236730 ttaagttatttaaaaaattaattttgattgaagattt-ttaattgggggcattttggtactt 40236670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 32277520 - 32277568
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||| |||||||||||||| |||||||||||| ||||||| ||||||    
T  32277520 aaacaacacatcaaatctactctatttctcatctctttctctcttccca 32277568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 40091113 - 40091062
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||||  | |||||||||||||||||||||| ||||||||| ||||||    
T  40091113 atcaaacaacccttcaaatctactatatttctcatatttttctctcttccca 40091062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 3632712 - 3632762
Alignment:
Q  95 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 145  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  3632712 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 3632762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 37031309 - 37031267
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||| |||| ||||||||||||||||| |||||||    
T  37031309 caaacaatacatgaaatttactatatttctcatctctttctct 37031267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 38478820 - 38478778
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||| ||||||||||||||| | ||||||||||||    
T  38478820 caaacaatacattaaatctactatattttttatctttttctct 38478778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 46290527 - 46290485
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||| |||||||||||| ||||||||||||| |||||||    
T  46290527 caaacaatccatcaaatctaccatatttctcatctctttctct 46290485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 3632965 - 3632997
Alignment:
Q  320 aatctactatatttctcatctttttctcttttc 352  Q
    |||||||| ||||||||||||||||||||||||    
T  3632965 aatctactctatttctcatctttttctcttttc 3632997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 11749247 - 11749207
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttct 346  Q
    |||||||| ||||||||||||| ||||||| ||||||||||    
T  11749247 caaacaatccatcaaatctactttatttcttatctttttct 11749207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 52457599 - 52457511
Alignment:
Q  179 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  52457599 taaaaattggattaagttatttaataaattaattttgattgaaggtttattaattaggggtattttggtacttctgaaaataatcaaca 52457511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 34412866 - 34412967
Alignment:
Q  167 tcaacaattta--ataaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatca 264  Q
    |||||||||||  ||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||||| ||||||||||||    
T  34412866 tcaacaatttagaatagaaattggattaagttatttaacaaattaattttgattgaaggtttattaattaggg-tattttcgtacttttaaaaataatca 34412964  T
Q  265 aca 267  Q
    |||    
T  34412965 aca 34412967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 34412751 - 34412837
Alignment:
Q  62 ttcttattaataagtagagtttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataatcttc 149  Q
    ||||||||||||||  |||||||||||||||  ||||||||| ||| |||||||||||||||||| |||||||||| | |||||||||    
T  34412751 ttcttattaataagatgagtttcaataagaat-aaaaaatgagttctaatttatttggatgaaattacaaattaattaaataatcttc 34412837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 35106077 - 35106165
Alignment:
Q  179 taaaagttggattaagttatttaataaattaattttgattgaagg-tttattagttagggacattttggtacttctaaaaataatcaaca 267  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||| ||| ||  |||||||||||| |||||||||||||||    
T  35106077 taaaaattggattaagttatttaataaattaactttgatcgaaggttttatta-ttaagggtattttggtacttttaaaaataatcaaca 35106165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 34413006 - 34413054
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccc 354  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  34413006 caaacaatacatcaaatctactttatttttcatctttttctctcttccc 34413054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 32208361 - 32208319
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  32208361 caaaccatacatcaaatctactctatttctcatctttttctct 32208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 35105968 - 35106018
Alignment:
Q  95 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 145  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||| |||||    
T  35105968 aaaaaatgaattctaatttatttggatgaaattacaaattaatgaaataat 35106018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 44937121 - 44937072
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||  |||||||||||||||||||||||||| ||||||| ||||||    
T  44937121 caaacaacccatcaaatctactatatttctcatctctttctctcttccca 44937072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 52457730 - 52457666
Alignment:
Q  81 tttcaataagaaacaaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 145  Q
    ||||||||||||  ||||| ||| ||| |||||||||||||||| | |||||||||||| |||||    
T  52457730 tttcaataagaataaaaaattgagttctaatttatttggatgaagttacaaattaatgaaataat 52457666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 6329377 - 6329419
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||    
T  6329377 caaacaatatatcaaatctactctatttcttatctttttctct 6329419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 53448031 - 53448073
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||| ||||||||| |||||||||||| |||||||    
T  53448031 caaacaatacattaaatctactctatttctcatctctttctct 53448073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 56052669 - 56052711
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  56052669 caaaccatccatcaaatctactatatttctcatctatttctct 56052711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 34841111 - 34841067
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||    
T  34841111 atcaaacaacccatcaaatctactctatttctcatctatttctct 34841067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 13260 - 13174
Alignment:
Q  179 taaaagttggattaagttatttaataaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaa 265  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||    
T  13260 taaaaattgaattaagttatttaataaattaattttgattgaaggtttattaattaggggcattttggtacttctaaaaagaatcaa 13174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 13373 - 13323
Alignment:
Q  95 aaaaaatgacttcaaatttatttggatgaaataacaaattaatgatataat 145  Q
    ||||||||| ||| |||||||||||||||| | |||||||||||| |||||    
T  13373 aaaaaatgagttctaatttatttggatgaagtcacaaattaatgaaataat 13323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 13120 - 13088
Alignment:
Q  320 aatctactatatttctcatctttttctcttttc 352  Q
    |||||||| ||||||||||||||||||||||||    
T  13120 aatctactctatttctcatctttttctcttttc 13088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 38674404 - 38674315
Alignment:
Q  179 taaaagttggattaagttatttaataaattaa-ttttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 267  Q
    ||||| ||| |||||||||||||||||||||| |||| |||||| |||||||| ||||||  |||||||||||| |||||||||||||||    
T  38674404 taaaaattgaattaagttatttaataaattaagttttcattgaatgtttattaattaggggtattttggtacttttaaaaataatcaaca 38674315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 16660017 - 16660059
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  16660017 caaacaatacatcaaatctactatatttctcacctttttctct 16660059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 43360376 - 43360327
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||||||||||||||||| |||||||||||| ||||||| ||||||    
T  43360376 caaacaatacatcaaatctactctatttctcatctatttctctcttccca 43360327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 4851384 - 4851428
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||||| |||||||||| |||||||||    
T  4851384 atcaaacaatacatcaaatctactctatttctcatatttttctct 4851428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 17150988 - 17150947
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  17150988 aaacagtacatcaaatctactatatttctcacctttttctct 17150947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 23201945 - 23201994
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||| ||||||||||||||||| |||||||||||| ||||||| ||||||    
T  23201945 caaagaatacatcaaatctactctatttctcatctatttctctcttccca 23201994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 38674270 - 38674233
Alignment:
Q  311 aatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38674270 aatacaacaaatctactatatttctcatctttttctct 38674233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 741151 - 741195
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||    
T  741151 atcaatcaacacatcaaatctactatatttctcatctctttctct 741195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 8170434 - 8170390
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||| |||||||||||||| || ||||||||||||||||||||    
T  8170434 atcaaataatacatcaaatcttctctatttctcatctttttctct 8170390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 30724692 - 30724644
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    ||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  30724692 aaacaatacatcaaatctactatatttctcccatttttctctcttccca 30724644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 19067336 - 19067294
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||| |||||||||||||| |||||||||||| |||||||    
T  19067336 caaacaacacatcaaatctactctatttctcatctctttctct 19067294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 19115226 - 19115184
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||| |||||||||||||| |||||||||||| |||||||    
T  19115226 caaacaacacatcaaatctactctatttctcatctctttctct 19115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 14591504 - 14591537
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctca 337  Q
    |||||||||||||||||||||||| |||||||||    
T  14591504 atcaaacaatacatcaaatctactctatttctca 14591537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 41318507 - 41318463
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||    
T  41318507 atcaaacaactcatcaaatctactctatttctcatctatttctct 41318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 22914392 - 22914457
Alignment:
Q  203 taaattaattttgattgaaggtttattagttagggacattttggtacttcta-aaaataatcaaca 267  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||| || |||||||||||||    
T  22914392 taaattaattttgattgaaggtttattaattaggggtattttggtacttttacaaaataatcaaca 22914457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 10405858 - 10405794
Alignment:
Q  203 taaattaattttgattgaaggtttattagttagggacattttggtacttctaaaaataatcaaca 267  Q
    |||||||||||||||  |||||||  || | ||||||||||||||||||||||||||||||||||    
T  10405858 taaattaattttgatccaaggttttctattaagggacattttggtacttctaaaaataatcaaca 10405794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 22914475 - 22914517
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  22914475 caaacaatacatcaaatctactctatttctcatctttttctct 22914517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 43638443 - 43638485
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  43638443 caaacaatacatcaaatctactatatttctcatcattttctct 43638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 14930840 - 14930798
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  14930840 caaacaatacctcaaatctactacacttctcatctttttctct 14930798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 18754063 - 18754021
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||    
T  18754063 caaacaatacatcaaatctattatatttttcacctttttctct 18754021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 24100719 - 24100677
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  24100719 caaacaatacatcaaatcttctctatttctcatctctttctct 24100677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 27631597 - 27631555
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||||||||||||| || ||||||||||| ||||||||    
T  27631597 caaacaatacatcaaatcttctctatttctcatcattttctct 27631555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 28860463 - 28860421
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||    
T  28860463 caaacaatccatcaaatctactctatttttcatctttttctct 28860421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 34649643 - 34649685
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||| |||||||||  |||||||||    
T  34649643 caaacaatacatcaaatctactctatttctcacatttttctct 34649685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 33099632 - 33099681
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||  ||||||||||||| |||||||||||| ||||||| ||||||    
T  33099632 caaacaacccatcaaatctactctatttctcatctctttctctattccca 33099681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 38783689 - 38783737
Alignment:
Q  306 caaacaatacatcaaatctactatatttct--catctttttctcttttc 352  Q
    |||||||| |||||||||||||||||||||  ||||||| |||||||||    
T  38783689 caaacaattcatcaaatctactatatttctcacatctttctctcttttc 38783737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 37513309 - 37513357
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccc 354  Q
    |||||||||| ||||||||||| ||||||||| || ||||||| |||||    
T  37513309 caaacaatacctcaaatctactctatttctcacctctttctctcttccc 37513357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 24695920 - 24695855
Alignment:
Q  203 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaaca 267  Q
    |||||||||||||||||||||||| || | | |||| |||||||||||||||||||||||||||||    
T  24695920 taaattaattttgattgaaggtttttttaataaggggcattttggtacttctaaaaataatcaaca 24695855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 27516260 - 27516302
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  27516260 caaacaatacatcaaatctactctatttctcatctttttctct 27516302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 4986950 - 4986991
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  4986950 aaacaatacatcaaatctactctatttctcatctttttctct 4986991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 34672667 - 34672715
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctcttttc 352  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  34672667 atcaaacaacccatcaaatctactttatttctcatctttttctcttttc 34672715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 36040430 - 36040383
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttcc 353  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  36040430 caaacaatacatcaaatctactctatttctcacctttttctctcttcc 36040383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 5175657 - 5175703
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttc 352  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||    
T  5175657 caaacaatatatcaaatcttctctatttctcatctttttctcttttc 5175703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 13848892 - 13848850
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  13848892 caaacaatacctcaaatctactatatttctcatctatttctct 13848850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 40687019 - 40687068
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    ||||||||||||||||||||||||||||||||  | ||||||| ||||||    
T  40687019 caaacaatacatcaaatctactatatttctcacatatttctctcttccca 40687068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 52253845 - 52253884
Alignment:
Q  316 atcaaatctactatatttctcatctttttctcttttccca 355  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  52253845 atcaaatctactatatttctcatctctttctctcttccca 52253884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 24929201 - 24929159
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||| ||||||||||||| |||||||||||| |||||||    
T  24929201 caaacaattcatcaaatctactctatttctcatctatttctct 24929159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Complemental strand, 44430119 - 44430089
Alignment:
Q  306 caaacaatacatcaaatctactatatttctc 336  Q
    |||||||||||||||||||||||||||||||    
T  44430119 caaacaatacatcaaatctactatatttctc 44430089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 45059197 - 45059262
Alignment:
Q  203 taaattaattttgattgaaggtttatt-agttagggacattttggtacttctaaaaataatcaaca 267  Q
    |||||||||||||||||||| ||| || | | ||||  ||||||||||||||| ||||||||||||    
T  45059197 taaattaattttgattgaagttttttttaataaggggtattttggtacttctagaaataatcaaca 45059262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 20497365 - 20497409
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||    
T  20497365 atcaaataatccatcaaatctactctatttctcatctttctctct 20497409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 39692582 - 39692626
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||| ||||||||||| ||||||||| || |||||||    
T  39692582 atcaaacaatacctcaaatctactctatttctcacctctttctct 39692626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 49952195 - 49952239
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||    
T  49952195 atcaaacaactcatcaaatctactctatttctcatctatttctct 49952239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 28905570 - 28905612
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  28905570 caaacaatacatcaaatctactatatttctcacctttttctct 28905612  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 28941965 - 28942007
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  28941965 caaacaatacatcaaatctactatatttctcacctttttctct 28942007  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 29801761 - 29801719
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  29801761 caaacaatacatcaaatctactctatttttcatctttttctct 29801719  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 38923949 - 38923997
Alignment:
Q  307 aaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||| |||||||||||||| |||||||||||| ||||||| ||||||    
T  38923949 aaacaacacatcaaatctactctatttctcatctctttctctcttccca 38923997  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 11447261 - 11447303
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||| |||||||||||| ||||||||| ||||||||||    
T  11447261 caaacaatatatcaaatctactctatttctcacctttttctct 11447303  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 18515737 - 18515695
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    |||||||||||| ||||||||| |||||||||||| |||||||    
T  18515737 caaacaatacattaaatctactctatttctcatctctttctct 18515695  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 32657945 - 32657903
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||| |||||||||||| |||||||||||| |||||||    
T  32657945 caaacaatatatcaaatctactctatttctcatctatttctct 32657903  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 35468050 - 35468092
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  35468050 caaacaatacatcaaatcttctctatttctcatctctttctct 35468092  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 38503617 - 38503575
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctct 348  Q
    ||||||||| |||||||||||| ||||||||| ||||||||||    
T  38503617 caaacaatatatcaaatctactctatttctcaactttttctct 38503575  T

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Target: scaffold0091 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 346
Target Start/End: Original strand, 15517 - 15559
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttct 346  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||    
T  15517 atcaaacaatccatcaaatctactttatttatcatctttttct 15559  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 362992 - 363041
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||||||||||||||| |||||||||||  | ||||||| ||||||    
T  362992 caaacaatacatcaaatctattatatttctcacatctttctctcttccca 363041  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 4843403 - 4843452
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||  ||||||||||||| |||||||||||| ||||||| ||||||    
T  4843403 caaacaacccatcaaatctactttatttctcatctctttctctcttccca 4843452  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 18601349 - 18601300
Alignment:
Q  306 caaacaatacatcaaatctactatatttctcatctttttctcttttccca 355  Q
    |||||||  ||||||||||||| |||||||||||| ||||||| ||||||    
T  18601349 caaacaacccatcaaatctactctatttctcatctatttctctcttccca 18601300  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 10087 - 10039
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctcttttc 352  Q
    |||||||||||||||||||||| | |||||||||  | |||||||||||    
T  10087 atcaaacaatacatcaaatctaatctatttctcacatatttctcttttc 10039  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 7341250 - 7341298
Alignment:
Q  304 atcaaacaatacatcaaatctactatatttctcatctttttctcttttc 352  Q
    |||||||||||||||||||||| | |||||||||  | |||||||||||    
T  7341250 atcaaacaatacatcaaatctaatctatttctcacatatttctcttttc 7341298  T

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