View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_35 (Length: 347)

Name: NF11482_low_35
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_35
NF11482_low_35
[»] chr3 (12 HSPs)
chr3 (1-335)||(11391704-11392040)
chr3 (1-87)||(11367039-11367125)
chr3 (1-87)||(11375747-11375833)
chr3 (5-87)||(11362713-11362795)
chr3 (1-87)||(11385519-11385605)
chr3 (219-268)||(8446749-8446798)
chr3 (133-204)||(11362862-11362933)
chr3 (203-269)||(2899955-2900021)
chr3 (206-254)||(8538914-8538962)
chr3 (213-249)||(4861081-4861117)
chr3 (213-249)||(4881088-4881124)
chr3 (206-254)||(51661709-51661757)
[»] scaffold1173 (1 HSPs)
scaffold1173 (1-87)||(2366-2452)
[»] chr7 (10 HSPs)
chr7 (5-87)||(17186581-17186663)
chr7 (207-270)||(4407394-4407457)
chr7 (205-270)||(3997145-3997210)
chr7 (209-270)||(15468240-15468301)
chr7 (207-270)||(4463415-4463478)
chr7 (1-91)||(17192131-17192220)
chr7 (205-270)||(11842783-11842848)
chr7 (211-270)||(32022001-32022059)
chr7 (285-331)||(17186404-17186450)
chr7 (203-270)||(28937374-28937442)
[»] chr8 (4 HSPs)
chr8 (205-270)||(19742070-19742135)
chr8 (205-270)||(24527763-24527828)
chr8 (219-269)||(1046606-1046656)
chr8 (205-254)||(16290884-16290933)
[»] chr6 (6 HSPs)
chr6 (203-270)||(15828235-15828302)
chr6 (222-258)||(15558726-15558762)
chr6 (219-270)||(23402037-23402088)
chr6 (205-270)||(14641464-14641530)
chr6 (206-270)||(13570494-13570559)
chr6 (218-270)||(15561988-15562040)
[»] chr5 (8 HSPs)
chr5 (219-269)||(24069934-24069984)
chr5 (222-269)||(19935968-19936015)
chr5 (219-270)||(29858612-29858663)
chr5 (209-270)||(17065244-17065305)
chr5 (222-270)||(25247594-25247642)
chr5 (222-270)||(25311378-25311426)
chr5 (218-269)||(38302082-38302133)
chr5 (203-261)||(30413797-30413855)
[»] chr4 (5 HSPs)
chr4 (205-270)||(13336978-13337043)
chr4 (205-270)||(44453065-44453130)
chr4 (220-270)||(41068900-41068950)
chr4 (220-269)||(16913356-16913405)
chr4 (213-258)||(549350-549395)
[»] scaffold0356 (1 HSPs)
scaffold0356 (205-270)||(13753-13818)
[»] chr2 (4 HSPs)
chr2 (205-270)||(28948899-28948964)
chr2 (219-270)||(5252073-5252124)
chr2 (205-268)||(24360852-24360915)
chr2 (209-269)||(30419010-30419070)
[»] chr1 (5 HSPs)
chr1 (205-270)||(3833411-3833476)
chr1 (206-268)||(24961877-24961940)
chr1 (218-270)||(31893155-31893206)
chr1 (208-266)||(907647-907706)
chr1 (205-254)||(12629250-12629299)
[»] scaffold0196 (1 HSPs)
scaffold0196 (206-254)||(793-841)
[»] scaffold0007 (1 HSPs)
scaffold0007 (206-254)||(173897-173945)
[»] scaffold0437 (1 HSPs)
scaffold0437 (205-270)||(11442-11508)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 11391704 - 11392040
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatcagctactttttaac 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11391704 taagataaaatatatatagtgcttgaaacatgcaagttcaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatcagctactttttaac 11391803  T
Q  101 tgatctatatccagatgcacgtaactttgacttgtgatacctcgcatcaatatgtttggttttggctacatatgtctcattgtttgctaaataaatggca 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11391804 tgatctatatccagatgcacgtaactttaacttgtgatacctcgcatcaatatgtttgcttttggctacatatgtctcattgtttgctaaataaatggca 11391903  T
Q  201 cattccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc--nnnnnnnnnnnnnntggcacattgacta 298  Q
    |||  |||||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||                ||||||||||||||    
T  11391904 catcacggggtgctaacttaattgggatgtcggtgttgtctcctgatgtctgtctctctccttgcttagcaaaaaaaaataaaaaatggcacattgacta 11392003  T
Q  299 tcacattgtaatcgaactccaccttatttaacattca 335  Q
    | |||||||||||||||||||||||||||||||||||    
T  11392004 taacattgtaatcgaactccaccttatttaacattca 11392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11367039 - 11367125
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  11367039 taagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaacttggtcaatacatca 11367125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11375747 - 11375833
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  11375747 taagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaacttggtcaatacatca 11375833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 11362713 - 11362795
Alignment:
Q  5 ataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| ||| |||||||||||||||    
T  11362713 ataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaagttggtcaatacatca 11362795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11385519 - 11385605
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||| ||| |||||| ||| |||||||||||||||    
T  11385519 taagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaattttttactaatgagtaatttggtcaatacatca 11385605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 8446798 - 8446749
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgctta 268  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  8446798 tagttggtatgtcggtgttatctcctgatgtctgtctctctccttgctta 8446749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 11362862 - 11362933
Alignment:
Q  133 tgtgatacctcgcatcaatatgtttggttttggctacatatgtctcattgtttgctaaataaatggcacatt 204  Q
    ||||||||||| |||||||||||||||||| |||  ||||   |||| ||||||| ||||||||||||||||    
T  11362862 tgtgatacctcacatcaatatgtttggtttgggcatcatacacctcaatgtttgccaaataaatggcacatt 11362933  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 2899955 - 2900021
Alignment:
Q  203 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    |||| |||||| || |||||||||||||| |||| | |||||||||||||||| |||| ||||||||    
T  2899955 ttccagggtgccaacctagttgggatgtcagtgtagcctcctgatgtctgtctttctctctgcttag 2900021  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 8538962 - 8538914
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    |||||||| ||||||||||||||||||||||| || | |||||||||||    
T  8538962 cggggtgccaatctagttgggatgtcggtgttttcccttgatgtctgtc 8538914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 4861117 - 4861081
Alignment:
Q  213 ctaatctagttgggatgtcggtgttgtctcctgatgt 249  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4861117 ctaatctagttaggatgtcggtgttgtctcatgatgt 4861081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 4881124 - 4881088
Alignment:
Q  213 ctaatctagttgggatgtcggtgttgtctcctgatgt 249  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4881124 ctaatctagttaggatgtcggtgttgtctcatgatgt 4881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 51661709 - 51661757
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    |||||||| || ||||||||||||||| ||||| ||| |||||||||||    
T  51661709 cggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctgtc 51661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2366 - 2452
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| ||| |||||||||||||||    
T  2366 taagataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaagttggtcaatacatca 2452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 17186663 - 17186581
Alignment:
Q  5 ataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatca 87  Q
    ||||||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  17186663 ataaaatatatgtagtgtttgaaacatgtaagtccaagcggtgcttcaatttgttactaatgagtaacttggtcaatacatca 17186581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 4407457 - 4407394
Alignment:
Q  207 ggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||| || ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  4407457 ggggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 4407394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 3997210 - 3997145
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||| ||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  3997210 ccgggatgccaacctagttgggatgtcggtgttgcctcctgatgtctgtctgtctctctgcttagc 3997145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 15468301 - 15468240
Alignment:
Q  209 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||| || ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  15468301 ggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 15468240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 4463478 - 4463415
Alignment:
Q  207 ggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||| || |||||||||||||| |||| | |||||||||||||||| ||||||||||||||    
T  4463478 ggggtgccaacctagttgggatgtcagtgtggcctcctgatgtctgtctttctccctgcttagc 4463415  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17192220 - 17192131
Alignment:
Q  1 taagataaaatatatatagtgcttgaaacatgcaagtccaagcagtgcttcaatttgttagtaatgactaacttggtcaatacatcagcta 91  Q
    |||||| |||||||| || ||||||||||||| ||| | ||| |||| |||||||||||| |||||||  ||||||||| |||||||||||    
T  17192220 taagattaaatatatgtactgcttgaaacatgtaagac-aagtagtgattcaatttgttactaatgaccgacttggtcactacatcagcta 17192131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 11842783 - 11842848
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||| | || |||||||||||||||||||||  ||||||||| ||||| ||||||||||||||    
T  11842783 ccggggtaccaacctagttgggatgtcggtgttgcttcctgatgtttgtctgtctccctgcttagc 11842848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 32022001 - 32022059
Alignment:
Q  211 tgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  32022001 tgctaacctagttgggatgtcggtgt-gcctcctgatgtctgtcttcctccctgcttagc 32022059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 17186450 - 17186404
Alignment:
Q  285 tggcacattgactatcacattgtaatcgaactccaccttatttaaca 331  Q
    |||||||||||||||||||||  ||||||||||||| || |||||||    
T  17186450 tggcacattgactatcacatttcaatcgaactccacattgtttaaca 17186404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 28937374 - 28937442
Alignment:
Q  203 ttccggggtgctaatctagttgggatgtcggtgttgtct-cctgatgtctgtctctctccctgcttagc 270  Q
    ||||||| ||| || ||||||||||||||||||| | || |||||||||||||| | ||| ||||||||    
T  28937374 ttccgggatgccaacctagttgggatgtcggtgtggcctccctgatgtctgtctttttccttgcttagc 28937442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 19742070 - 19742135
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19742070 ccggggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 19742135  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 24527828 - 24527763
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||  |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24527828 ccggggtgtcaatctaattgggatgtcggtgttgtcccctgatgtctttctctctccctgcttagc 24527763  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 1046606 - 1046656
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1046606 tagttgggatgtcggtgttgtctcctgatgtccatctctcttcctgcttag 1046656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 16290884 - 16290933
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    ||||||||| || ||||||||||||||||||||| ||| |||||| ||||    
T  16290884 ccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtc 16290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 270
Target Start/End: Original strand, 15828235 - 15828302
Alignment:
Q  203 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15828235 ttcctgggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 15828302  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 15558726 - 15558762
Alignment:
Q  222 ttgggatgtcggtgttgtctcctgatgtctgtctctc 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  15558726 ttgggatgtcggtgttgtctcctgatgtctgtctctc 15558762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 23402037 - 23402088
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    |||||||||||||||||| | |||||||||| ||||| ||||||||||||||    
T  23402037 tagttgggatgtcggtgtggcctcctgatgtttgtctttctccctgcttagc 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 14641464 - 14641530
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 270  Q
    ||||||||| || ||||||||||||||||||||  ||| |||||| ||| ||||||||||| |||||    
T  14641464 ccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 14641530  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 13570494 - 13570559
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 270  Q
    |||||||| |||||||||||||||| ||||||  ||| |||||  ||| |||||||||||||||||    
T  13570494 cggggtgccaatctagttgggatgtaggtgttccctcttgatgcatgtcctctctccctgcttagc 13570559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 15562040 - 15561988
Alignment:
Q  218 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||||||| ||||  | |||||||||| ||||| ||||||||||||||    
T  15562040 ctagttgggatgtgggtgcggcctcctgatgtttgtctttctccctgcttagc 15561988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 24069934 - 24069984
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24069934 tagttgggatgtcggtgttgtctcctgatgcctgtctctctccctgcttag 24069984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 19936015 - 19935968
Alignment:
Q  222 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  19936015 ttgggatgtcggtgttgcctcctgatgtctgtctcactccctgcttag 19935968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 29858612 - 29858663
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  29858612 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 29858663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 17065305 - 17065244
Alignment:
Q  209 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||| || ||||||||||||| ||||| | |||||||||||||||| ||||||||||||||    
T  17065305 ggtgccaacctagttgggatgttggtgtggcctcctgatgtctgtctttctccctgcttagc 17065244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 25247642 - 25247594
Alignment:
Q  222 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  25247642 ttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25247594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 25311426 - 25311378
Alignment:
Q  222 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  25311426 ttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 38302133 - 38302082
Alignment:
Q  218 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    ||||||||||||||||||||| || |||||||| |||||||||||| |||||    
T  38302133 ctagttgggatgtcggtgttgccttctgatgtccgtctctctccctacttag 38302082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 30413797 - 30413855
Alignment:
Q  203 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctcc 261  Q
    ||||||||||| ||  |||||  ||||||||||||||||||||||||||| || |||||    
T  30413797 ttccggggtgccaacttagttacgatgtcggtgttgtctcctgatgtctgactttctcc 30413855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 13336978 - 13337043
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  13336978 ccggggtgtcaatctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 13337043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 44453130 - 44453065
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||| || ||||||||||||||| ||| | |||||||||||||||| ||||||||||||||    
T  44453130 ccggggtgccaacctagttgggatgtcgatgtggcctcctgatgtctgtctttctccctgcttagc 44453065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 41068900 - 41068950
Alignment:
Q  220 agttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  41068900 agttgggatgtcggtgttgcctcatgatgcctgtctctctccctgcttagc 41068950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 16913405 - 16913356
Alignment:
Q  220 agttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    |||||||||||||||||||||| | |||||||| || |||||||||||||    
T  16913405 agttgggatgtcggtgttgtcttcggatgtctgactttctccctgcttag 16913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 549350 - 549395
Alignment:
Q  213 ctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctc 258  Q
    |||||||||||||||||||| |||||| || |||||||| ||||||    
T  549350 ctaatctagttgggatgtcgatgttgtttcttgatgtctctctctc 549395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 13753 - 13818
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||  |||||||    
T  13753 ccggggtgccaacctagttgggatgtcggcgttgtttcctgatgtctgtctctctcctcgcttagc 13818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 28948899 - 28948964
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  28948899 ccggggtgccaacatagttgggatgtcggtgttgtctcctgatgtctgttattctccctgcttagc 28948964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 5252124 - 5252073
Alignment:
Q  219 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  5252124 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 5252073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 24360915 - 24360852
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgctta 268  Q
    ||||| ||| || |||| ||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  24360915 ccgggatgccaacctagctgggatgtcggtgttgtttcctgatgtctgtctttctccttgctta 24360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 30419010 - 30419070
Alignment:
Q  209 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 269  Q
    ||||| || ||||||||||||||| ||| |  ||||| ||||||||| |||||||||||||    
T  30419010 ggtgccaacctagttgggatgtcgatgtggcttcctggtgtctgtctttctccctgcttag 30419070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 3833476 - 3833411
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||| || ||||||||||||||||||| | |||||||||||||||| ||||| ||||||||    
T  3833476 ccggggtgccaacctagttgggatgtcggtgtagcctcctgatgtctgtctttctccatgcttagc 3833411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Original strand, 24961877 - 24961940
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgctta 268  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||| |||||||| ||||||    
T  24961877 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtcctctctccttgctta 24961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 31893155 - 31893206
Alignment:
Q  218 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 270  Q
    ||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  31893155 ctagttgggatgtcggtgt-gcctcctgatgtctgtcttcctccctgcttagc 31893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 266
Target Start/End: Complemental strand, 907706 - 907647
Alignment:
Q  208 gggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc-tctctccctgct 266  Q
    |||||| |||||||||||||||||| || |||||| ||||||||||| ||||||| ||||    
T  907706 gggtgccaatctagttgggatgtcgatgatgtctcttgatgtctgtcatctctccttgct 907647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 12629299 - 12629250
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    ||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||    
T  12629299 ccgggatgccaatctagttgggatgtcggtgttttctcccgatgtttgtc 12629250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 793 - 841
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||||||    
T  793 cggggtgccaacctagttgggatgtcggtgttgcctcttgatgtctgtc 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 173897 - 173945
Alignment:
Q  206 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 254  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||||    
T  173897 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtc 173945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 11442 - 11508
Alignment:
Q  205 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 270  Q
    ||||||||| || ||||||||||||||||||||  ||| |||||| ||| ||||||||||| |||||    
T  11442 ccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 11508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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