View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_36 (Length: 331)
Name: NF11482_low_36
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 17052840 - 17053154
Alignment:
| Q |
1 |
taccatctaaagaacattgatacaattcaataaacaagatgcagataactgagagactgaatgaattgattcaaaagcatattgaatcgatttaaaacat |
100 |
Q |
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| T |
17052840 |
taccatctaaagaacattgatacaattcaataaccaagatgcagataacccaaagactgaatgaattgattcaaaagcatattgaatcgatttaaaacat |
17052939 |
T |
|
| Q |
101 |
tttaaccaaacaaacgaggaaaacaatgaattgattcaaatgttgcaaggaaatttt-ttgaatctaatcaatatctttaaaatgtaaaatctggagaaa |
199 |
Q |
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| T |
17052940 |
tttaaccaaacaaacgaggcaaacaatgaattgattcaaatgttgcaaggaaatttttttgaatcgaatcaatatctttaaaatgtaaaatctggagaaa |
17053039 |
T |
|
| Q |
200 |
acttggatagtaaggatcacctaaacttaatatcaatgcaaggatacataagacattattgttgacaatttcgagattgagattaactagggtgctttaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
17053040 |
acttggatagtaaggatcacctaaacttaatatcaatgcaaggacacataagacattattgtagacgatttcgagattgagattaactagggtgctttaa |
17053139 |
T |
|
| Q |
300 |
cataactaagcaatt |
314 |
Q |
| |
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|||||||||| |||| |
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| T |
17053140 |
cataactaagaaatt |
17053154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 41581670 - 41581799
Alignment:
| Q |
56 |
actgaatgaattgattcaaaagcatattgaatcgatttaaaacattttaaccaaacaaacgaggaaaacaatgaattgattcaaatgttgcaaggaaatt |
155 |
Q |
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| T |
41581670 |
actgaatgaatcgaatcaaaatcttattgaatcgatttaaaacccttaaaccaaacacccgatagaggcaatgattcgattcaaaagttgcaagacaata |
41581769 |
T |
|
| Q |
156 |
ttttgaatctaatcaatatctttaaaatgt |
185 |
Q |
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| T |
41581770 |
ttttgaatggaatcaaattatttaaaatgt |
41581799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 11028938 - 11029046
Alignment:
| Q |
206 |
atagtaaggatcacctaaacttaatatcaatgcaaggatacataagacattattgttgacaatttcgagattgagattaactagggtgctttaacataac |
305 |
Q |
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|||||| ||| ||||||||||||||| |||||| ||| ||||||||| |||| ||| || ||||| ||||||| ||| |||||||| ||| ||||||| |
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| T |
11028938 |
atagtacggaacacctaaacttaataccaatgctagggtacataagatattactgtagattatttcaagattgaaattgactagggttattttacataac |
11029037 |
T |
|
| Q |
306 |
taagcaatt |
314 |
Q |
| |
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||| ||||| |
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| T |
11029038 |
taatcaatt |
11029046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 9290199 - 9290162
Alignment:
| Q |
9 |
aaagaacattgatacaattcaataaacaagatgcagat |
46 |
Q |
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||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
9290199 |
aaagaacattgatacaattcaataaccaagattcagat |
9290162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 13799311 - 13799343
Alignment:
| Q |
278 |
gagattaactagggtgctttaacataactaagc |
310 |
Q |
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| T |
13799311 |
gagattaaatagggtgctttaacataactaagc |
13799343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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