View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_40 (Length: 319)

Name: NF11482_low_40
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_40
NF11482_low_40
[»] chr2 (12 HSPs)
chr2 (19-312)||(12011988-12012281)
chr2 (18-312)||(12005559-12005853)
chr2 (33-312)||(11986937-11987216)
chr2 (78-312)||(12018383-12018611)
chr2 (127-185)||(10348313-10348371)
chr2 (129-173)||(14550914-14550958)
chr2 (127-182)||(8573046-8573101)
chr2 (117-172)||(8579033-8579088)
chr2 (126-169)||(9365193-9365236)
chr2 (117-184)||(10336367-10336434)
chr2 (127-164)||(9357732-9357769)
chr2 (223-308)||(10336243-10336328)
[»] chr1 (3 HSPs)
chr1 (126-186)||(29452859-29452919)
chr1 (78-163)||(29442819-29442904)
chr1 (78-173)||(29467285-29467380)
[»] chr8 (1 HSPs)
chr8 (126-186)||(41966263-41966323)
[»] scaffold0667 (1 HSPs)
scaffold0667 (127-173)||(5020-5066)
[»] chr4 (1 HSPs)
chr4 (126-154)||(561786-561814)


Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 12011988 - 12012281
Alignment:
Q  19 taaccaccccccttccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccga 118  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12011988 taaccacccctcttccactccatcatcctctgtcttacaccaagcgcatcacactctttggttcatgtaacggcctcatctgcatttcctcaaacaccga 12012087  T
Q  119 aaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgcctttttc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12012088 aaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgaaaccaaaatccactacgcctttttc 12012187  T
Q  219 acttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12012188 acttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 12012281  T

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Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 12005559 - 12005853
Alignment:
Q  18 ctaaccaccccccttccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccg 117  Q
    ||||||||| || | ||||||||||| ||||||||  || ||||  |||||| |||||| ||||||||||| |||||  ||||||||||||| ||  |||    
T  12005559 ctaaccaccgccatcccactcaaccaccctctgtccaacgccaacggcatcaaactcttcggttcatgtaacggcctcctctgcatttcctccaaagccg 12005658  T
Q  118 aaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgccttttt 217  Q
    ||| | | |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||| ||    
T  12005659 aaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcctcaatctgagaccaaagcccactacgccttatt 12005758  T
Q  218 cacttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||| ||||||||||||||    
T  12005759 cacttacggattcggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcatcgatttaacaaactttacttttgattcat 12005853  T

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Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 11986937 - 11987216
Alignment:
Q  33 ccactcaaccatcctctgtcttacaccaagcgcatcacactctttggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctgga 132  Q
    ||||||||||| ||||||| ||||||||| |||||| |||| || ||||||||||| |||||  ||||||||||||| |||| ||||| ||| |||||||    
T  11986937 ccactcaaccaccctctgttttacaccaaccgcatcgcacttttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctgga 11987036  T
Q  133 accctaacatccgtaaacatcagattatccctaatctccctgtttctattcctcaatctgagaccaaaatccactacgcctttttcacttacggatttgg 232  Q
    ||||||||| ||||||||||| |||||||||| |||||| | |  || ||||||||||||| | ||| ||||||| ||||||   || | ||||||| ||    
T  11987037 accctaacacccgtaaacatcggattatccctcatctccttatcccttttcctcaatctgatatcaacatccacttcgccttaaccattcacggattcgg 11987136  T
Q  233 ctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgattcat 312  Q
    |||||||||||| || ||||| ||||| || ||||||||||||||||| |||||| |||| |||  ||||||||||||||    
T  11987137 ctttgatcctttttcatccgattacaaactcatcagaatctcttggtttgttgatctacacaaccgtacttttgattcat 11987216  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 78 - 312
Target Start/End: Original strand, 12018383 - 12018611
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgttt 177  Q
    ||||||||||| |||||  ||||||||||||| |||| ||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||||          
T  12018383 ggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctcc------ 12018476  T
Q  178 ctattcctcaatctgagaccaaaatccactacgcctttttcacttacggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttg 277  Q
    |||||||||||||||| | |||  | || |  ||||||| |  |||||| || || ||||||||||| ||||| || || || ||| |||||||||||||    
T  12018477 ctattcctcaatctgacagcaatttgcaatttgccttttgcgtttacggcttcggttttgatcctttgtcctctgattataaacttgtcagaatctcttg 12018576  T
Q  278 gttcgttgatttacaaaactctacttttgattcat 312  Q
    ||| |||||| |||| |||  ||||||||||||||    
T  12018577 gtttgttgatctacacaaccgtacttttgattcat 12018611  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 10348371 - 10348313
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcct 185  Q
    ||||||||||||||| |||||||||||| |||||||||  ||||||| || ||||||||    
T  10348371 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattcct 10348313  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 14550958 - 14550914
Alignment:
Q  129 tggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||    
T  14550958 tggaaccctaacatccgtaaacatcgcattatccctgatctccct 14550914  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 8573046 - 8573101
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctatt 182  Q
    ||||||||||||||| |||||||||||| |||||||||  ||||||| || |||||    
T  8573046 tctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 8579033 - 8579088
Alignment:
Q  117 gaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccc 172  Q
    |||| ||| ||||||||||||||||||||||||||||   |||||||| |||||||    
T  8579033 gaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 9365236 - 9365193
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatct 169  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||    
T  9365236 ttctggaaccctaacatccgtaaacatcggatcatcccttatct 9365193  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 10336434 - 10336367
Alignment:
Q  117 gaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcc 184  Q
    |||| ||| ||||| || |||| |||||||||||||| |||||||||| |||||||| || |||||||    
T  10336434 gaaatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccctcttcctattcc 10336367  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 9357769 - 9357732
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccct 164  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9357769 tctggaaccataacatccgtaaacatcacattatccct 9357732  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 10336328 - 10336243
Alignment:
Q  223 acggatttggctttgatcctttatcctccgactacaagcttatcagaatctcttggttcgttgatttacaaaactctacttttgat 308  Q
    ||||||| || |||||| | |||||| |||| ||||| ||  ||||||||||||||||||| ||| ||||| ||  ||||||||||    
T  10336328 acggattcggttttgattcattatccgccgattacaaactcctcagaatctcttggttcgtcgatctacaacaccatacttttgat 10336243  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 29452859 - 29452919
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctc 186  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  29452859 ttctggaaccctaacatccgtaaacatcagaatattcctaatctccctatttctattcctc 29452919  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 29442819 - 29442904
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccc 163  Q
    ||||||||||| |||||| ||||||||||||| ||  | | || ||| |||||||||||||||||||||||||| | |||||||||    
T  29442819 ggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacatccgtaaacaccggattatccc 29442904  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 173
Target Start/End: Original strand, 29467285 - 29467380
Alignment:
Q  78 ggttcatgtaagggccttatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    ||||||||||| |||||| |||||||||||   ||   || || ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  29467285 ggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatccgtaaacatcggattattcctaatctccct 29467380  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 41966263 - 41966323
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatcagattatccctaatctccctgtttctattcctc 186  Q
    |||||||||||||||||| ||||||||| ||||||||||  ||||||| || |||||||||    
T  41966263 ttctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcctc 41966323  T

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Target: scaffold0667 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 5066 - 5020
Alignment:
Q  127 tctggaaccctaacatccgtaaacatcagattatccctaatctccct 173  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||    
T  5066 tctggaaccctaacatccgtaaacatcacattatcccttttctccct 5020  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 561814 - 561786
Alignment:
Q  126 ttctggaaccctaacatccgtaaacatca 154  Q
    |||||||||||||||||||||||||||||    
T  561814 ttctggaaccctaacatccgtaaacatca 561786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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