View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_42 (Length: 314)
Name: NF11482_low_42
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 8300552 - 8300840
Alignment:
| Q |
18 |
tcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttatactccatagtttg |
117 |
Q |
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| T |
8300552 |
tcttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttgtactccatagtttg |
8300651 |
T |
|
| Q |
118 |
catttcaactctgatactttctgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300652 |
catttcaactctgatactttctgagttcccttttaattccactctatcctccatagacttgatagactcaagaaaattcagcgtaaagtttttgatatat |
8300751 |
T |
|
| Q |
218 |
ctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctc |
306 |
Q |
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| T |
8300752 |
ctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctc |
8300840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 8296991 - 8297262
Alignment:
| Q |
35 |
tgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatac |
134 |
Q |
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| T |
8296991 |
tgaaattaacaaggcaagaaattttactagagataaatccgcataaagcttttgagaaaattcattttaccctccatagtttgcatttcaactctgatac |
8297090 |
T |
|
| Q |
135 |
tttctgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatctaacaaacagcaaaga |
234 |
Q |
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| T |
8297091 |
tttctaagttcccttttaattccattctatcctccatagacttgatagactcgagaaaattcagcatcaagtttttgaaatatctaataaacaccaaaga |
8297190 |
T |
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| Q |
235 |
attatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctc |
306 |
Q |
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|||||||| |||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
8297191 |
attatccatcacagccaccttaattatcatccatttttcatccagattatccagattttctcccttcttctc |
8297262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 18279675 - 18279385
Alignment:
| Q |
19 |
cttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaa---agatttcgagacacttcattttatactccatagtt |
115 |
Q |
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| T |
18279675 |
cttcaaactttgaaaatgaaattaacaagccaagaaattttactcgagataagtacgcataataaagcttttgagacaattcaaattatcctccatagtt |
18279576 |
T |
|
| Q |
116 |
tgcatttcaactctgatactttctgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatat |
215 |
Q |
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||| |||||||| ||| ||||||| |||||||||||||||||| |||||||| || |||||| |||||||| |||||||||||||||||| ||||||||| |
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| T |
18279575 |
tgcttttcaactttgacactttctaagttcccttttaattccattctatcctccaaagacttaatagactcgagaaaattcagcgtaaagcttttgatat |
18279476 |
T |
|
| Q |
216 |
atctaacaaacagcaaagaattatccaacacaaccaccttaattatcatccatttttcgtcaagactatccagattttctcccttcttctc |
306 |
Q |
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||| || | || |||| |||||| ||| |||| || ||||||||||||| | | |||||| ||||||||||||| |||||||||| |
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| T |
18279475 |
atccaatatacgtcaaaatattatcaaactttgccacattgattatcatccattgtacatcaagattatccagattttcaaccttcttctc |
18279385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 1145177 - 1145428
Alignment:
| Q |
19 |
cttcaaactttgaaaatgaaattaacaaggcaagaaattttactcgagatagatctgcgtaaagatttcgagacacttcattttatactccatagtttgc |
118 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| || ||||| ||||||| || ||||||||| ||||||||||||| |
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| T |
1145177 |
cttcaaactttgaaaatgaaattaaccaggcaagatattttactcgagataaatccgcataaagctttcgagccaaatcattttatcctccatagtttgc |
1145276 |
T |
|
| Q |
119 |
atttcaactctgatactttctgagttcccttttaattccactctatccttcatagacttgatagactcaagaaaattcagcgtaaagtttttgatatatc |
218 |
Q |
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||||||| ||||||||||||| |||||||||||||||||| |||||||| || | ||||||||||||| ||||||||||| |||||| |||| ||| || |
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| T |
1145277 |
atttcaattctgatactttctaagttcccttttaattccattctatcctccagatacttgatagactcgagaaaattcagtgtaaagcttttcatacttc |
1145376 |
T |
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| Q |
219 |
taacaaacagcaaagaattatccaacacaaccaccttaattatcatccattt |
270 |
Q |
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|||||||| |||| |||||| ||| | |||| || |||||||||||||| |
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| T |
1145377 |
taacaaacgtcaaaatattatcaaacttagccacattgattatcatccattt |
1145428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 21120613 - 21120553
Alignment:
| Q |
78 |
taaagatttcgagacacttcattttatactccatagtttgcatttcaactctgatactttc |
138 |
Q |
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||||||||| ||||||| | | | ||| |||||||||||||||||||||||||| |||||| |
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| T |
21120613 |
taaagattttgagacacatgagtctatcctccatagtttgcatttcaactctgagactttc |
21120553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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