View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_low_43 (Length: 309)
Name: NF11482_low_43
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 49521040 - 49520758
Alignment:
| Q |
12 |
aagaagagggcttaattctcttgaagaaactgccttcttatccttctataacttggtatgttggtgatgagatattcctttgaaatgtttcataatcata |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49521040 |
aagaagagggcttaattctcttgaagaaactgctttcttatccttctataacttggtatgttggtgatgagatattcctttgaaatgtttcataatcata |
49520941 |
T |
|
| Q |
112 |
ttttgctttcctcttttccacctt-ctaactctgggtttacttcattttattatctcaggtatatgttgagatgcatcaccaagtaatgcagacaataat |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520940 |
ttttgctttcctcttttccacctttctaactctgggtttacttcattttattatctcaggtatatgttgagatgcatcaccaagtaatgcagacaataat |
49520841 |
T |
|
| Q |
211 |
agctatggtattctctattttccattctacgttatatataatcagtttatttctcagttcattataatttatgatggaaactt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49520840 |
agctatggtattctctattttccattctacgttatatataatcagtttatttctcagttcattataatttatgatggaaactt |
49520758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 49701700 - 49701562
Alignment:
| Q |
139 |
actctgggtttacttcattttatt-atctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattctctattttcca-tt |
236 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||||||| |||||||||| ||||||||| | ||||| |||| |||||||| ||| ||||||| || |
|
|
| T |
49701700 |
actctgggattacttcactttatttatctcaggtatatgatgagatgcatagacaagtaatggatgcaatattagcaatggtattttctgttttccattt |
49701601 |
T |
|
| Q |
237 |
ctacgttatatataatcagtttatttctcagttcattat |
275 |
Q |
| |
|
|| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
49701600 |
ttatgttatttataaacaatttatttctcagttcattat |
49701562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 49531887 - 49531743
Alignment:
| Q |
137 |
taactctgggtttacttcattttatt-atctcaggtatatgttgagatgcatcaccaagtaatgcagacaataatagctatggtattctctattttccat |
235 |
Q |
| |
|
||||| ||| |||||||| |||||| | ||||||||||||||||||||||| |||| ||| | ||||| |||||||||||||| | ||| |||| |
|
|
| T |
49531887 |
taactttggttttacttcgatttatttaactcaggtatatgttgagatgcatagagaagtgatggatgcaatattagctatggtattccatgtttcccat |
49531788 |
T |
|
| Q |
236 |
t-ctacgttatatataatcagtttatttctcagttcattataatt |
279 |
Q |
| |
|
| ||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
49531787 |
ttctatgttatttataatcaatttatttctcagttcattataatt |
49531743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 49485318 - 49485277
Alignment:
| Q |
27 |
ttctcttgaagaaactgccttcttatccttctataacttggt |
68 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
49485318 |
ttctcttgaagaaactggcttcttatccttctatcacttggt |
49485277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 49701828 - 49701787
Alignment:
| Q |
27 |
ttctcttgaagaaactgccttcttatccttctataacttggt |
68 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
49701828 |
ttctcttgaagaaactggcttcttatccttctattacttggt |
49701787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University