View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_44 (Length: 306)
Name: NF11482_low_44
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 19340554 - 19340294
Alignment:
| Q |
1 |
ttgaatgaaaaagcactcagaaaataaaaagagattgattgattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340554 |
ttgaatgaaaaagcactcagaaaataaaaagagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttt |
19340455 |
T |
|
| Q |
101 |
tattgataattatttataatatatgatccaaatattgtggctat----catcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcctttta |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340454 |
tattgataattatttataatatatgatccaaatattgtggctatcatccatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcctttta |
19340355 |
T |
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| Q |
197 |
ttttataaattaatatcaaatatcaataacaaactttatcaaattctattactgttttgtg |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19340354 |
ttttataaattaatatcaaatatcaataacaaactttatcaaattctattactgttttgtg |
19340294 |
T |
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Back To:
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Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 13079546 - 13079736
Alignment:
| Q |
4 |
aatgaaaaagcactcagaaaa---taaaaagagattgattgattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13079546 |
aatgaaaaagcactcagaaaaaaataaaaagagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttatgtttggttt |
13079645 |
T |
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| Q |
101 |
tattgataattatttataatatatgatccaaatattgtggctatcatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcc |
191 |
Q |
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| T |
13079646 |
tattgataattatttataatatatgatcctaatattgtggctatcatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcc |
13079736 |
T |
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