View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_47 (Length: 280)
Name: NF11482_low_47
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 57 - 264
Target Start/End: Complemental strand, 31202355 - 31202148
Alignment:
| Q |
57 |
tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaattttacgcctttg |
156 |
Q |
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| T |
31202355 |
tatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgatgagccgaaacatgaacaattttacgcctttg |
31202256 |
T |
|
| Q |
157 |
ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatctc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202255 |
ccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgttttacagatctc |
31202156 |
T |
|
| Q |
257 |
atcattct |
264 |
Q |
| |
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|||||||| |
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| T |
31202155 |
atcattct |
31202148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 31215679 - 31215439
Alignment:
| Q |
15 |
atgaacagagccatttattccttaagttcacaggtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaa |
114 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31215679 |
atgaacagagccatttattccttaagtccacaagtgaagcaatattcacaccctctaaataagaaaagaatatatgcatgcatgatcaattgaggaggaa |
31215580 |
T |
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| Q |
115 |
ggtgaaacgataagccgaaacatgaacaattttacgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaata |
214 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31215579 |
gctgaaacgatgagccgaaacatgaacaattttacgcctttgccgcggctccggagaacagattctagagcctatgatgctcctcctcacacttccaata |
31215480 |
T |
|
| Q |
215 |
atcctcatgaattcaatgaagtacctgtgttttacagatct |
255 |
Q |
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| T |
31215479 |
atcctcatgaattcaatgaagttcctgtgtttttcagatct |
31215439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 13606136 - 13605924
Alignment:
| Q |
48 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgaacaattgaggaggaaggtgaaacgataagccgaaacatgaacaatttt |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13606136 |
gtgaagcaatatttacaccctctaaataagaaaagaatatatgcatgcatgttcaattgaggaggaaggtgaaacgatgagccgaaacatgaacaatttt |
13606037 |
T |
|
| Q |
148 |
acgcctttgccagggcttcggagaacagattctagagcctatggtgctcctcatcacacttccaataatcctcatgaattcaatgaagtacctgtgtttt |
247 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
13606036 |
acgccttagccagggcttcggagaacagattctagagcctatgatgctccttatcaaacttacaataatcctcatgaattcaattaagtacctgtgtttt |
13605937 |
T |
|
| Q |
248 |
acagatctcatca |
260 |
Q |
| |
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|| |||||||||| |
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|
| T |
13605936 |
acggatctcatca |
13605924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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