View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_5 (Length: 627)
Name: NF11482_low_5
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 215 - 612
Target Start/End: Original strand, 30651496 - 30651893
Alignment:
| Q |
215 |
catcatggagggcaaaatgtaatggcataacgatttgccaaacaagacataagcccggttgcatcatcataagcatagctataagcatgaggacaaacac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30651496 |
catcatggagggcaaaatgtaatggcataacgatttgccaaacaagacataagcccggttgcatcatcataagcatagctataagcatgaggacaaacac |
30651595 |
T |
|
| Q |
315 |
tcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccaatgcaacaatacttatctgattttgtagccaaacaagcact |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30651596 |
tcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccagtgcaacaatacttatctgattttgtagccaaacaagcact |
30651695 |
T |
|
| Q |
415 |
tttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattcaaatcagcttgacaagaagcaattccacaaccaacaccg |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
30651696 |
tttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattcaaatcagcttgacaagtagcaatgccacaaccaacaccc |
30651795 |
T |
|
| Q |
515 |
ccaccaataggtttcatcgacattggaaggttaaaaccgtcaactaaactaacatcatagtaatgtagaggtgaatgtgaggttccaagtgtcatttc |
612 |
Q |
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| T |
30651796 |
ccaccaataggtttcatcgacattggaaggttaaaaccgtcaactaaactaacatcatagtaatgtagaggtgaatgtgaggttccaagtgtcatttc |
30651893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 30651291 - 30651413
Alignment:
| Q |
10 |
aagaaatataatagcaatgttgaatgctcaatcaacaacttaaataattgaagtaattaaacatctttattacatgacaaaatcaaaattccagatgaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30651291 |
aagaaatataatagcaatgttgaatgctcaatcaacaacttaaataattgaagtaattaaacatctttcttacatgacaaaatcaaaattccagatgaca |
30651390 |
T |
|
| Q |
110 |
tagtactatgaatcactaacctt |
132 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
30651391 |
tagtactatgaatcactaacctt |
30651413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 277 - 612
Target Start/End: Original strand, 22787091 - 22787426
Alignment:
| Q |
277 |
atcatcataagcatagctataagcatgaggacaaacactcttaaaaacacgagcaaacatagttggcttgcaaattttcggatcagcaaattcaccaatg |
376 |
Q |
| |
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||||||||||||||| |||||||| | ||| |||| | |||||| | | |||||| | || || || ||| |||| ||||||| | | || ||| || |
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| T |
22787091 |
atcatcataagcataactataagctttagggcaaatagccttaaagagattagcaaaaagtgtaggtttacaagttttaggatcagaataatctccagtg |
22787190 |
T |
|
| Q |
377 |
caacaatacttatctgattttgtagccaaacaagcacttttacaccccacaactttcccattatgcttcacaacaagttgagatggacaacaaccattca |
476 |
Q |
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|||||||| ||| | |||| |||||||||||||||||||||| || |||||||||||||| |||||| ||||| |||||||||||| |||||| |
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| T |
22787191 |
caacaatatttagcagattgcatagccaaacaagcacttttacaaccaacaactttcccatttctcttcacttcaagtgctgatggacaacaaacattca |
22787290 |
T |
|
| Q |
477 |
aatcagcttgacaagaagcaattccacaaccaacaccgccaccaataggtttcatcgacattggaaggttaaaaccgtcaactaaactaacatcatagta |
576 |
Q |
| |
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||||| ||| ||||||||| ||||||||||||| || ||||||| ||||||||| || | || | || ||||| ||||||||||| ||||||||| | |
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| T |
22787291 |
aatcaacttcacaagaagctattccacaaccaattccaccaccaacaggtttcattgaaacaggtaaattgaaaccatcaactaaactcacatcatagaa |
22787390 |
T |
|
| Q |
577 |
atgtagaggtgaatgtgaggttccaagtgtcatttc |
612 |
Q |
| |
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|||||| |||||| ||| | ||| ||||||||||| |
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|
| T |
22787391 |
atgtagtggtgaagatgatgatcctagtgtcatttc |
22787426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 41458154 - 41458122
Alignment:
| Q |
277 |
atcatcataagcatagctataagcatgaggaca |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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|
| T |
41458154 |
atcatcataagcatagctataagcttgaggaca |
41458122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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