View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_53 (Length: 257)
Name: NF11482_low_53
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_53 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 43347378 - 43347628
Alignment:
| Q |
7 |
ggagcagagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagttattca |
106 |
Q |
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| T |
43347378 |
ggagcagagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagttattca |
43347477 |
T |
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| Q |
107 |
cttcctcattagcataacaaagaactataatgttaatacccatctaaaatctaatcgcctgatctatgtgattatcatcactcttaattctcagatggta |
206 |
Q |
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| T |
43347478 |
cttcctcattagcataacaaagaactataatgttaatacccatctaaaatctaatcgcctgatctatgtgattatcatcactcttaattctcagatggta |
43347577 |
T |
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| Q |
207 |
tgttgatagcatgccaatacgggttttccgaaactacgaacacgaaggcat |
257 |
Q |
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| T |
43347578 |
tgttgatagcatgccaatacgggttttccgaaactacgaacacgaaggcat |
43347628 |
T |
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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 33449599 - 33449688
Alignment:
| Q |
12 |
agagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcccacagaaattgtgtaagtt |
101 |
Q |
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| T |
33449599 |
agagagcaacaattttatctttggtttgacccaactgctgattttcataactacactatccattggaaccctactgaaattgtgtaagtt |
33449688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 53499025 - 53499074
Alignment:
| Q |
11 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
60 |
Q |
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| T |
53499025 |
cagagagcaacaattttacctttggtttgacccaactgcagattttcaca |
53499074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 53492720 - 53492769
Alignment:
| Q |
11 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
60 |
Q |
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| T |
53492720 |
cagagagcaacaaatttacctttggtttgacccaactgcagattttcaca |
53492769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 53495068 - 53495138
Alignment:
| Q |
12 |
agagagcaacaatttcacctctggtttgacccaactgctgattttcacaattacaccattcactggaatcc |
82 |
Q |
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| T |
53495068 |
agagaacaacaattccatctatggtttgatccaactgctgattttcacacatactccattctttggaatcc |
53495138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 37188660 - 37188709
Alignment:
| Q |
11 |
cagagagcaacaatttcacctctggtttgacccaactgctgattttcaca |
60 |
Q |
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| T |
37188660 |
cagagagcaacaattctacctatggtttgacccaactgcagattttcaca |
37188709 |
T |
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