View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_59 (Length: 250)
Name: NF11482_low_59
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 42825179 - 42825424
Alignment:
| Q |
1 |
gaaatcaataacaggtttattataatcatcaaaagttagaatagaatcagcatcagattgatcaattccactacttttaaggtctatgcatgagactttg |
100 |
Q |
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| T |
42825179 |
gaaatcaataacaggtttattataatcatcaaaagttagaatagaatcagcatcagattgatcaattccactacttttaaggtctatgcatgagactttg |
42825278 |
T |
|
| Q |
101 |
tacccagaattctccataaggcacttaattttgtaccagcaccaacctccaccacctatgccatgtactagcacaaagtgttgttgtttcaaatgaatac |
200 |
Q |
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| T |
42825279 |
tacccagaattctccataaggcacttaattttgtaccagcaccaacctccaccacctatgccatgtactagcacaaagtgttgttgtttcaaatgaatac |
42825378 |
T |
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| Q |
201 |
tattaatttctcttgaattattagaatcaacaccttcttctctctc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
42825379 |
tattaatttctcttgaattattagaatcaacaccatcttctatctc |
42825424 |
T |
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Back To:
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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 28794937 - 28794771
Alignment:
| Q |
14 |
ggtttattataatcatcaaaagttagaatagaatcagcatcagattgatcaattccactacttttaaggtctatgcatgagactttgtacccagaattct |
113 |
Q |
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|||| ||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
28794937 |
ggttgattataatcatcaaaagaaagaacagaatcagcatcagattgattaattcctgcacttttgaggtctatgcaagagactttgtagccagaattct |
28794838 |
T |
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| Q |
114 |
ccataaggcacttaattttgtaccagcaccaacctccaccacctatgccatgtactagcacaaagtg |
180 |
Q |
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| T |
28794837 |
ccataaggcacctgattttgtaccagcaccaacctcctccacctatgccatgtactaacacaaagtg |
28794771 |
T |
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