View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_6 (Length: 623)
Name: NF11482_low_6
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 136 - 613
Target Start/End: Original strand, 12192218 - 12192695
Alignment:
| Q |
136 |
taaccttgcaattttctagggcttggttcctctctagctcgggaaatagaaatataaaaagaaagaggctcagattgagtcatcgtaaatttacacacat |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12192218 |
taaccttgcaattttctagggcttggttcctctctagctcgggaaatagaaatataaaaagaaagaggctcagattgagtcatcataaatttacacacat |
12192317 |
T |
|
| Q |
236 |
caccgactcgcaagttattttccttggtaaataaattccaaccagcattcacaatagaacttctgtttgcataatcaaacttcacattcaccttccaagt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12192318 |
caccgactcgcaagttattttccttggtaaataaattccaaccagcactcacaatagaacttctgtttgcataatcaaacttcacattcaccttccaagt |
12192417 |
T |
|
| Q |
336 |
tctatcatcaccaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttatt |
435 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12192418 |
tctatcatcaccaaccctaatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtatcctctgtttcaattcaaggtttatt |
12192517 |
T |
|
| Q |
436 |
agagatattaattaaagccaaaatagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaactt |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12192518 |
agagatattaattaaagccaaaatagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaactt |
12192617 |
T |
|
| Q |
536 |
ggattcttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12192618 |
ggattcttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
12192695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 137 - 613
Target Start/End: Complemental strand, 12879372 - 12878894
Alignment:
| Q |
137 |
aaccttgcaattttctagggcttggttcctctctagctcgggaaatagaaatataaaaagaaagaggctcagattgagtcatcgtaaatttacacacatc |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| ||||| || || |||||||||||| ||| ||||||||||| |
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| T |
12879372 |
aaccttgcaatttgttagggcttggttcctctctaactcgagaaatagaaatatcaaatgaaagtggttcggattgagtcatctcaaacttacacacatc |
12879273 |
T |
|
| Q |
237 |
accgactcgcaagttattttccttggtaaataaattccaaccagcattcacaatagaacttctgtttgcataatcaaacttcacattcaccttccaagtt |
336 |
Q |
| |
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||| ||| |||||||||| || |||||||||||||||||||| |||||| |||||||| ||| || |||||||||||||||||||||||||||||| | |
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| T |
12879272 |
accaacttgcaagttattatctttggtaaataaattccaacctacattcagaatagaacatcttttaccataatcaaacttcacattcaccttccaagct |
12879173 |
T |
|
| Q |
337 |
ctatcatcaccaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttatta |
436 |
Q |
| |
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||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||| ||||| ||| |
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| T |
12879172 |
ctatcctcaccaacccttaaccttgcaaacccttcgaactcgttcaagtattctcttgaaaactttgttggtatccactgtttcaattcttggtttgtta |
12879073 |
T |
|
| Q |
437 |
gagatattaattaaagccaaaa--tagaagacattttcaaaagtaaacttacaaataagtttccttgggcataaaattgtgtcaatttaagttcaaaact |
534 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| || |||||||||||| |||| || ||| ||||| | |||||||||||||||||||||| |
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| T |
12879072 |
gagatattaattaaagccaaaaattagtagacattttaaagagtaaacttacacataaacggccatggacataacttcgtgtcaatttaagttcaaaact |
12878973 |
T |
|
| Q |
535 |
tggattcttattgttggatttcttattatttgcttcagctattgaacatctcttagccttcttcgtcatgcctcctttg |
613 |
Q |
| |
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|||||| ||| |||||||||| |||| || ||| ||||||||| ||||| || ||||| ||||||| ||||||| |
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| T |
12878972 |
tggatttccattattggatttctcattaaccactccagttattgaacacctctttgctttcttagtcatgcttcctttg |
12878894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 340 - 453
Target Start/End: Original strand, 12886416 - 12886529
Alignment:
| Q |
340 |
tcatcaccaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagag |
439 |
Q |
| |
|
|||| |||||||||||| ||||| | |||| || | |||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
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|
| T |
12886416 |
tcattaccaacccttattgttgcagttcctttaaaattgttcaagtgttctcttgaaaacttacttggtacccactgtttcaaatcatagtttattagag |
12886515 |
T |
|
| Q |
440 |
atattaattaaagc |
453 |
Q |
| |
|
|||||||||||||| |
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| T |
12886516 |
atattaattaaagc |
12886529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 345 - 459
Target Start/End: Complemental strand, 12941664 - 12941550
Alignment:
| Q |
345 |
accaacccttatccttgcaatcccttcgaactcgttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatatt |
444 |
Q |
| |
|
||||||||||| ||||| |||||| || |||||||||| |||||||||||||| || ||||| || ||||||||| | | ||||||||||||||||| |
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| T |
12941664 |
accaacccttactgttgcagtccctttaaaatcgttcaagtgttctcttgaaaactcacatggtaaccactgtttcaaataatggtttattagagatatt |
12941565 |
T |
|
| Q |
445 |
aattaaagccaaaat |
459 |
Q |
| |
|
||||||||| ||||| |
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| T |
12941564 |
aattaaagctaaaat |
12941550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 12977462 - 12977531
Alignment:
| Q |
390 |
tcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
459 |
Q |
| |
|
||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
12977462 |
tcttgaaaagtcacttggtatcctctatttcaattcaaggtttattagagatattagttaaagacaaaat |
12977531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 459
Target Start/End: Complemental strand, 12949667 - 12949588
Alignment:
| Q |
380 |
tcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
459 |
Q |
| |
|
|||||| |||||||||||||| || ||||| || ||||||||| | | |||||||||||||||||||||||||| ||||| |
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|
| T |
12949667 |
tcaagtgttctcttgaaaactcacatggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaat |
12949588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 12955305 - 12955227
Alignment:
| Q |
381 |
caagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
459 |
Q |
| |
|
||||| |||||||||||||| || ||||| || ||||||||| | | |||||||||||||||||||||||||| ||||| |
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|
| T |
12955305 |
caagtgttctcttgaaaactcacgtggtaaccactgtttcaaataatggtttattagagatattaattaaagctaaaat |
12955227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 390 - 459
Target Start/End: Complemental strand, 19757042 - 19756973
Alignment:
| Q |
390 |
tcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
459 |
Q |
| |
|
||||||||| | |||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
19757042 |
tcttgaaaagtcacttggtatcctctatttcaattcaaggtttattagagataatatgtaaagccaaaat |
19756973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 12922950 - 12923023
Alignment:
| Q |
379 |
ttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaag |
452 |
Q |
| |
|
||||||| |||||||||||||| | |||||| || ||||||||| ||| | ||||||||||||||| ||||||| |
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|
| T |
12922950 |
ttcaagtgttctcttgaaaactcaattggtatcccctgtttcaaatcatgttttattagagatattgattaaag |
12923023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 459
Target Start/End: Original strand, 12915872 - 12915952
Alignment:
| Q |
379 |
ttcaagtattctcttgaaaacttacttggtaccctctgtttcaattcaaggtttattagagatattaattaaagccaaaat |
459 |
Q |
| |
|
||||||| |||||||||||||| | ||||| || ||||||||| | | ||||||||||| ||| |||||||||| ||||| |
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|
| T |
12915872 |
ttcaagtgttctcttgaaaactcaaatggtatccactgtttcaaataatggtttattagatataataattaaagctaaaat |
12915952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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