View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_60 (Length: 250)
Name: NF11482_low_60
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42185918 - 42186158
Alignment:
| Q |
1 |
tttaacagatggacaaaacaagaataggagttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcgaaaggg |
100 |
Q |
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| T |
42185918 |
tttaacagatggacaaaacaagaataggagttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcgaaaggg |
42186017 |
T |
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| Q |
101 |
tcataggaaaatttctccatttttcattccctacaccattcctaacagcagttctgctttattggctatagaaactggcctaatgggaccaaattattcc |
200 |
Q |
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| T |
42186018 |
tcataggaaaatttctccatttttcattccctacaccattcctaacagcagttctgctttattggctatagaaactggcctaatgggaccaaattattcc |
42186117 |
T |
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| Q |
201 |
atttctactgcttgtgcaacagcaaattactgcttctgtgc |
241 |
Q |
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| T |
42186118 |
atttctactgcttgtgcaacagcaaattactgcttttgtgc |
42186158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 42195601 - 42195833
Alignment:
| Q |
3 |
taacagatggacaaaacaagaataggagttctagtaggatcaggaatgggaggtgtatccacttttaacaatgctgtcgatgctctcactcgaaa-gggt |
101 |
Q |
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| T |
42195601 |
taacagatggacaaaacaagaataggagtactagttggatcaggaatgggtagtttaaccactattagcgatgctgtttctggttaca-tcgaaaaggga |
42195699 |
T |
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| Q |
102 |
cataggaaaatttctccatttttcattccctacaccattcctaacagcagttctgctttattggctatagaaactggcctaatgggaccaaattattcca |
201 |
Q |
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| T |
42195700 |
cataggaaaatttctccattttttgttccccacaccattcctaatatgggttctgctttattggctatagaaactggtctaatgggaccaaattattcca |
42195799 |
T |
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| Q |
202 |
tttctactgcttgtgcaacagcaaattactgctt |
235 |
Q |
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| T |
42195800 |
tttctactgcttgtgcaacagcaaattactgctt |
42195833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 42201598 - 42201677
Alignment:
| Q |
163 |
tggctatagaaactggcctaatgggaccaaattattccatttctactgcttgtgcaacagcaaattactgcttctgtgct |
242 |
Q |
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| T |
42201598 |
tggctatagaaactggcctaatgggaccaaattattccatttctactgcttgttcaacagcaaattattgcttttgtgct |
42201677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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