View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_64 (Length: 243)

Name: NF11482_low_64
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_64
NF11482_low_64
[»] chr3 (8 HSPs)
chr3 (19-231)||(11391826-11392040)
chr3 (115-164)||(8446749-8446798)
chr3 (29-100)||(11362862-11362933)
chr3 (99-165)||(2899955-2900021)
chr3 (102-150)||(8538914-8538962)
chr3 (109-145)||(4861081-4861117)
chr3 (109-145)||(4881088-4881124)
chr3 (102-150)||(51661709-51661757)
[»] chr8 (4 HSPs)
chr8 (101-166)||(19742070-19742135)
chr8 (101-166)||(24527763-24527828)
chr8 (115-165)||(1046606-1046656)
chr8 (101-150)||(16290884-16290933)
[»] chr6 (6 HSPs)
chr6 (99-166)||(15828235-15828302)
chr6 (118-154)||(15558726-15558762)
chr6 (115-166)||(23402037-23402088)
chr6 (101-166)||(14641464-14641530)
chr6 (102-166)||(13570494-13570559)
chr6 (114-166)||(15561988-15562040)
[»] chr5 (8 HSPs)
chr5 (115-165)||(24069934-24069984)
chr5 (118-165)||(19935968-19936015)
chr5 (115-166)||(29858612-29858663)
chr5 (105-166)||(17065244-17065305)
chr5 (118-166)||(25247594-25247642)
chr5 (118-166)||(25311378-25311426)
chr5 (114-165)||(38302082-38302133)
chr5 (99-157)||(30413797-30413855)
[»] chr4 (5 HSPs)
chr4 (101-166)||(13336978-13337043)
chr4 (101-166)||(44453065-44453130)
chr4 (116-166)||(41068900-41068950)
chr4 (116-165)||(16913356-16913405)
chr4 (109-154)||(549350-549395)
[»] chr7 (8 HSPs)
chr7 (103-166)||(4407394-4407457)
chr7 (101-166)||(3997145-3997210)
chr7 (105-166)||(15468240-15468301)
chr7 (103-166)||(4463415-4463478)
chr7 (101-166)||(11842783-11842848)
chr7 (107-166)||(32022001-32022059)
chr7 (181-227)||(17186404-17186450)
chr7 (99-166)||(28937374-28937442)
[»] scaffold0356 (1 HSPs)
scaffold0356 (101-166)||(13753-13818)
[»] chr2 (4 HSPs)
chr2 (101-166)||(28948899-28948964)
chr2 (115-166)||(5252073-5252124)
chr2 (101-164)||(24360852-24360915)
chr2 (105-165)||(30419010-30419070)
[»] chr1 (5 HSPs)
chr1 (101-166)||(3833411-3833476)
chr1 (102-164)||(24961877-24961940)
chr1 (114-166)||(31893155-31893206)
chr1 (104-162)||(907647-907706)
chr1 (101-150)||(12629250-12629299)
[»] scaffold0196 (1 HSPs)
scaffold0196 (102-150)||(793-841)
[»] scaffold0007 (1 HSPs)
scaffold0007 (102-150)||(173897-173945)
[»] scaffold0437 (1 HSPs)
scaffold0437 (101-166)||(11442-11508)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 11391826 - 11392040
Alignment:
Q  19 aactttgacttgtgatacctcgcatcaatatgtttggttttggctacatatgtctcattgtttgctaaataaatggcacattccggggtgctaatctagt 118  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  || |    
T  11391826 aactttaacttgtgatacctcgcatcaatatgtttgcttttggctacatatgtctcattgtttgctaaataaatggcacatcacggggtgctaacttaat 11391925  T
Q  119 tgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc--nnnnnnnnnnnnnntggcacattgactatcacattgtaatcgaactccac 216  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||                ||||||||||||||| ||||||||||||||||||||    
T  11391926 tgggatgtcggtgttgtctcctgatgtctgtctctctccttgcttagcaaaaaaaaataaaaaatggcacattgactataacattgtaatcgaactccac 11392025  T
Q  217 cttatttaacattca 231  Q
    |||||||||||||||    
T  11392026 cttatttaacattca 11392040  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 8446798 - 8446749
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgctta 164  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  8446798 tagttggtatgtcggtgttatctcctgatgtctgtctctctccttgctta 8446749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 11362862 - 11362933
Alignment:
Q  29 tgtgatacctcgcatcaatatgtttggttttggctacatatgtctcattgtttgctaaataaatggcacatt 100  Q
    ||||||||||| |||||||||||||||||| |||  ||||   |||| ||||||| ||||||||||||||||    
T  11362862 tgtgatacctcacatcaatatgtttggtttgggcatcatacacctcaatgtttgccaaataaatggcacatt 11362933  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 2899955 - 2900021
Alignment:
Q  99 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    |||| |||||| || |||||||||||||| |||| | |||||||||||||||| |||| ||||||||    
T  2899955 ttccagggtgccaacctagttgggatgtcagtgtagcctcctgatgtctgtctttctctctgcttag 2900021  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 8538962 - 8538914
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    |||||||| ||||||||||||||||||||||| || | |||||||||||    
T  8538962 cggggtgccaatctagttgggatgtcggtgttttcccttgatgtctgtc 8538914  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 4861117 - 4861081
Alignment:
Q  109 ctaatctagttgggatgtcggtgttgtctcctgatgt 145  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4861117 ctaatctagttaggatgtcggtgttgtctcatgatgt 4861081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 4881124 - 4881088
Alignment:
Q  109 ctaatctagttgggatgtcggtgttgtctcctgatgt 145  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  4881124 ctaatctagttaggatgtcggtgttgtctcatgatgt 4881088  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 51661709 - 51661757
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    |||||||| || ||||||||||||||| ||||| ||| |||||||||||    
T  51661709 cggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctgtc 51661757  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 19742070 - 19742135
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19742070 ccggggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 19742135  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 24527828 - 24527763
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||  |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24527828 ccggggtgtcaatctaattgggatgtcggtgttgtcccctgatgtctttctctctccctgcttagc 24527763  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 1046606 - 1046656
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  1046606 tagttgggatgtcggtgttgtctcctgatgtccatctctcttcctgcttag 1046656  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 16290884 - 16290933
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    ||||||||| || ||||||||||||||||||||| ||| |||||| ||||    
T  16290884 ccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtc 16290933  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 15828235 - 15828302
Alignment:
Q  99 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15828235 ttcctgggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 15828302  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 15558726 - 15558762
Alignment:
Q  118 ttgggatgtcggtgttgtctcctgatgtctgtctctc 154  Q
    |||||||||||||||||||||||||||||||||||||    
T  15558726 ttgggatgtcggtgttgtctcctgatgtctgtctctc 15558762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 23402037 - 23402088
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    |||||||||||||||||| | |||||||||| ||||| ||||||||||||||    
T  23402037 tagttgggatgtcggtgtggcctcctgatgtttgtctttctccctgcttagc 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 14641464 - 14641530
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 166  Q
    ||||||||| || ||||||||||||||||||||  ||| |||||| ||| ||||||||||| |||||    
T  14641464 ccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 14641530  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 13570494 - 13570559
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 166  Q
    |||||||| |||||||||||||||| ||||||  ||| |||||  ||| |||||||||||||||||    
T  13570494 cggggtgccaatctagttgggatgtaggtgttccctcttgatgcatgtcctctctccctgcttagc 13570559  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 15562040 - 15561988
Alignment:
Q  114 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||||||| ||||  | |||||||||| ||||| ||||||||||||||    
T  15562040 ctagttgggatgtgggtgcggcctcctgatgtttgtctttctccctgcttagc 15561988  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 24069934 - 24069984
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24069934 tagttgggatgtcggtgttgtctcctgatgcctgtctctctccctgcttag 24069984  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 19936015 - 19935968
Alignment:
Q  118 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  19936015 ttgggatgtcggtgttgcctcctgatgtctgtctcactccctgcttag 19935968  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 29858612 - 29858663
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  29858612 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 29858663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 17065305 - 17065244
Alignment:
Q  105 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||| || ||||||||||||| ||||| | |||||||||||||||| ||||||||||||||    
T  17065305 ggtgccaacctagttgggatgttggtgtggcctcctgatgtctgtctttctccctgcttagc 17065244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 25247642 - 25247594
Alignment:
Q  118 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  25247642 ttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25247594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 25311426 - 25311378
Alignment:
Q  118 ttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||    
T  25311426 ttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 38302133 - 38302082
Alignment:
Q  114 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    ||||||||||||||||||||| || |||||||| |||||||||||| |||||    
T  38302133 ctagttgggatgtcggtgttgccttctgatgtccgtctctctccctacttag 38302082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 30413797 - 30413855
Alignment:
Q  99 ttccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctcc 157  Q
    ||||||||||| ||  |||||  ||||||||||||||||||||||||||| || |||||    
T  30413797 ttccggggtgccaacttagttacgatgtcggtgttgtctcctgatgtctgactttctcc 30413855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 13336978 - 13337043
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  13336978 ccggggtgtcaatctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 13337043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 44453130 - 44453065
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||| || ||||||||||||||| ||| | |||||||||||||||| ||||||||||||||    
T  44453130 ccggggtgccaacctagttgggatgtcgatgtggcctcctgatgtctgtctttctccctgcttagc 44453065  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 41068900 - 41068950
Alignment:
Q  116 agttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  41068900 agttgggatgtcggtgttgcctcatgatgcctgtctctctccctgcttagc 41068950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 16913405 - 16913356
Alignment:
Q  116 agttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    |||||||||||||||||||||| | |||||||| || |||||||||||||    
T  16913405 agttgggatgtcggtgttgtcttcggatgtctgactttctccctgcttag 16913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 549350 - 549395
Alignment:
Q  109 ctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctc 154  Q
    |||||||||||||||||||| |||||| || |||||||| ||||||    
T  549350 ctaatctagttgggatgtcgatgttgtttcttgatgtctctctctc 549395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 4407457 - 4407394
Alignment:
Q  103 ggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||| || ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  4407457 ggggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 4407394  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 3997210 - 3997145
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||| ||| || ||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  3997210 ccgggatgccaacctagttgggatgtcggtgttgcctcctgatgtctgtctgtctctctgcttagc 3997145  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 15468301 - 15468240
Alignment:
Q  105 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||| || ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  15468301 ggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 15468240  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 4463478 - 4463415
Alignment:
Q  103 ggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||| || |||||||||||||| |||| | |||||||||||||||| ||||||||||||||    
T  4463478 ggggtgccaacctagttgggatgtcagtgtggcctcctgatgtctgtctttctccctgcttagc 4463415  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 11842783 - 11842848
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||| | || |||||||||||||||||||||  ||||||||| ||||| ||||||||||||||    
T  11842783 ccggggtaccaacctagttgggatgtcggtgttgcttcctgatgtttgtctgtctccctgcttagc 11842848  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 32022001 - 32022059
Alignment:
Q  107 tgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  32022001 tgctaacctagttgggatgtcggtgt-gcctcctgatgtctgtcttcctccctgcttagc 32022059  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 17186450 - 17186404
Alignment:
Q  181 tggcacattgactatcacattgtaatcgaactccaccttatttaaca 227  Q
    |||||||||||||||||||||  ||||||||||||| || |||||||    
T  17186450 tggcacattgactatcacatttcaatcgaactccacattgtttaaca 17186404  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 28937374 - 28937442
Alignment:
Q  99 ttccggggtgctaatctagttgggatgtcggtgttgtct-cctgatgtctgtctctctccctgcttagc 166  Q
    ||||||| ||| || ||||||||||||||||||| | || |||||||||||||| | ||| ||||||||    
T  28937374 ttccgggatgccaacctagttgggatgtcggtgtggcctccctgatgtctgtctttttccttgcttagc 28937442  T

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Target: scaffold0356 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 13753 - 13818
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||  |||||||    
T  13753 ccggggtgccaacctagttgggatgtcggcgttgtttcctgatgtctgtctctctcctcgcttagc 13818  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 28948899 - 28948964
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||| ||  |||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  28948899 ccggggtgccaacatagttgggatgtcggtgttgtctcctgatgtctgttattctccctgcttagc 28948964  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 166
Target Start/End: Complemental strand, 5252124 - 5252073
Alignment:
Q  115 tagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||||||||    
T  5252124 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 5252073  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 24360915 - 24360852
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgctta 164  Q
    ||||| ||| || |||| ||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  24360915 ccgggatgccaacctagctgggatgtcggtgttgtttcctgatgtctgtctttctccttgctta 24360852  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 30419010 - 30419070
Alignment:
Q  105 ggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttag 165  Q
    ||||| || ||||||||||||||| ||| |  ||||| ||||||||| |||||||||||||    
T  30419010 ggtgccaacctagttgggatgtcgatgtggcttcctggtgtctgtctttctccctgcttag 30419070  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 3833476 - 3833411
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||| || ||||||||||||||||||| | |||||||||||||||| ||||| ||||||||    
T  3833476 ccggggtgccaacctagttgggatgtcggtgtagcctcctgatgtctgtctttctccatgcttagc 3833411  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 24961877 - 24961940
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgctta 164  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||| |||||||| ||||||    
T  24961877 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtcctctctccttgctta 24961940  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 31893155 - 31893206
Alignment:
Q  114 ctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 166  Q
    ||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  31893155 ctagttgggatgtcggtgt-gcctcctgatgtctgtcttcctccctgcttagc 31893206  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 907706 - 907647
Alignment:
Q  104 gggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc-tctctccctgct 162  Q
    |||||| |||||||||||||||||| || |||||| ||||||||||| ||||||| ||||    
T  907706 gggtgccaatctagttgggatgtcgatgatgtctcttgatgtctgtcatctctccttgct 907647  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 12629299 - 12629250
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    ||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||    
T  12629299 ccgggatgccaatctagttgggatgtcggtgttttctcccgatgtttgtc 12629250  T

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Target: scaffold0196 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 793 - 841
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||||||    
T  793 cggggtgccaacctagttgggatgtcggtgttgcctcttgatgtctgtc 841  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 173897 - 173945
Alignment:
Q  102 cggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgtc 150  Q
    |||||||| || ||||||||||||||| || ||||||||||||||||||    
T  173897 cggggtgccaacctagttgggatgtcgatgatgtctcctgatgtctgtc 173945  T

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Target: scaffold0437 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 11442 - 11508
Alignment:
Q  101 ccggggtgctaatctagttgggatgtcggtgttgtctcctgatgtctgt-ctctctccctgcttagc 166  Q
    ||||||||| || ||||||||||||||||||||  ||| |||||| ||| ||||||||||| |||||    
T  11442 ccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 11508  T

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