View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11482_low_68 (Length: 238)

Name: NF11482_low_68
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11482_low_68
NF11482_low_68
[»] chr5 (4 HSPs)
chr5 (5-211)||(17244631-17244838)
chr5 (90-137)||(19850584-19850631)
chr5 (90-134)||(17244349-17244393)
chr5 (75-134)||(38981843-38981903)
[»] chr1 (2 HSPs)
chr1 (75-134)||(25267184-25267244)
chr1 (89-118)||(25267450-25267479)
[»] chr4 (4 HSPs)
chr4 (89-133)||(1719755-1719799)
chr4 (43-134)||(53232100-53232189)
chr4 (28-84)||(3608211-3608268)
chr4 (28-135)||(12824952-12825058)
[»] chr6 (1 HSPs)
chr6 (95-134)||(5352546-5352585)
[»] chr8 (1 HSPs)
chr8 (75-134)||(44379525-44379585)
[»] chr3 (1 HSPs)
chr3 (75-134)||(44506049-44506109)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 211
Target Start/End: Original strand, 17244631 - 17244838
Alignment:
Q  5 tggagaagcaaaggatgaaggatgaaattgttatctgattattatataaaggattaaatcagaagaaaacaaaaagataa-gtacgaaagtgttatctaa 103  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  17244631 tggaaaagaaaaggatgaaggacgaaattgttatctgattattatataaaggattaaatcagaagaaaacaaaaagataaagtacgaaagtgttacctaa 17244730  T
Q  104 aattaagttaagagatcaattatataatttttcccataagatgtcatgatctatagtgaaaaatcattgaagatgctaggcctaagtttattacctatgt 203  Q
    |||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17244731 aattaaattaagagatcaattatgtaatttttcctataagatgtcatgatatatagtgaaaaatcattgaagatgctaggcctaagtttattacctatgt 17244830  T
Q  204 cacatggc 211  Q
    ||||||||    
T  17244831 cacatggc 17244838  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 19850584 - 19850631
Alignment:
Q  90 aaagtgttatctaaaattaagttaagagatcaattatataatttttcc 137  Q
    |||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  19850584 aaagtgttatctaaaattaatttaagagatgaactatgtaatttttcc 19850631  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 17244393 - 17244349
Alignment:
Q  90 aaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  17244393 aaagtcttacctaaaattaaattaagagataaattatataatttt 17244349  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 38981843 - 38981903
Alignment:
Q  75 aaaaagat-aagtacgaaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    |||||||| ||| |||||||||||| |||||||||| ||||||||| || ||| |||||||    
T  38981843 aaaaagatgaaggacgaaagtgttacctaaaattaaattaagagatgaactatgtaatttt 38981903  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 25267244 - 25267184
Alignment:
Q  75 aaaaagataa-gtacgaaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    |||||||||| | ||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  25267244 aaaaagataaaggacgaaagtgttatctaaaattaaattaagggattaattatataatttt 25267184  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 25267450 - 25267479
Alignment:
Q  89 gaaagtgttatctaaaattaagttaagaga 118  Q
    ||||||||||||||||||||||||||||||    
T  25267450 gaaagtgttatctaaaattaagttaagaga 25267479  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 1719799 - 1719755
Alignment:
Q  89 gaaagtgttatctaaaattaagttaagagatcaattatataattt 133  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  1719799 gaaagtgttatctaaaattaggttaagtgataaattatataattt 1719755  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 53232189 - 53232100
Alignment:
Q  43 ttattatataaaggattaaatcagaagaaaacaaaaagataagtacgaaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    |||| ||||||||||||||||  ||| |||| ||||| | ||| |||||||| ||| |||||||||||||||||||| |||| | |||||||    
T  53232189 ttataatataaaggattaaataggaacaaaa-aaaaataaaag-acgaaagtattacctaaaattaagttaagagatgaattgtgtaatttt 53232100  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 3608268 - 3608211
Alignment:
Q  28 gaaattgttatctgattattatataaaggattaaatc-agaagaaaacaaaaagataa 84  Q
    |||| |||||||||||||| | |||||||||||||||  |||||||| ||||||||||    
T  3608268 gaaaatgttatctgattataacataaaggattaaatcgtgaagaaaaaaaaaagataa 3608211  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 12824952 - 12825058
Alignment:
Q  28 gaaattgttatctgattattatataaaggattaaatcagaagaaaacaaaaagat-aagtacgaaagtgttatctaaaattaagttaagagatcaattat 126  Q
    |||| |||||| ||||||| | |||||||||||||||  || ||||  ||||||| ||| |||||| |||||| ||||||||||||||  ||  ||||||    
T  12824952 gaaaatgttatgtgattataaaataaaggattaaatc--aaaaaaattaaaagataaagaacgaaaatgttatttaaaattaagttaaatgactaattat 12825049  T
Q  127 ataattttt 135  Q
     ||||||||    
T  12825050 gtaattttt 12825058  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 5352546 - 5352585
Alignment:
Q  95 gttatctaaaattaagttaagagatcaattatataatttt 134  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  5352546 gttatctaaaattaagttaagagattatttatataatttt 5352585  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 44379585 - 44379525
Alignment:
Q  75 aaaaagataa-gtacgaaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    |||||||||| | |||||||||||| |||||||||||||||| ||| |||| | |||||||    
T  44379585 aaaaagataaaggacgaaagtgttacctaaaattaagttaagggattaattgtgtaatttt 44379525  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 44506109 - 44506049
Alignment:
Q  75 aaaaagataa-gtacgaaagtgttatctaaaattaagttaagagatcaattatataatttt 134  Q
    |||||||||| | |||||||||||| |||||||||||||||| ||| |||| | |||||||    
T  44506109 aaaaagataaaggacgaaagtgttacctaaaattaagttaagggattaattgtgtaatttt 44506049  T

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