View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11482_low_73 (Length: 218)
Name: NF11482_low_73
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_73 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 4613697 - 4613841
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4613697 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggt |
4613796 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgctg |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613797 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgctg |
4613841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 144
Target Start/End: Complemental strand, 4592379 - 4592241
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
4592379 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttc |
4592280 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
4592279 |
atatatgaacttggacaaattgatcaaggaggtgttgct |
4592241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 4585787 - 4585652
Alignment:
| Q |
3 |
tggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4585787 |
tggtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttg |
4585688 |
T |
|
| Q |
103 |
ttcatatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
|||||| || |||||||| |||||||| || ||||| |
|
|
| T |
4585687 |
ttcatacataaacttggaaaaagtgattaaggaggt |
4585652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4579585 - 4579447
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
4579585 |
gctggttaatgaattgatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggc |
4579486 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtg |
139 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
4579485 |
tgttcatacatgaacttggagaaagtgattaaggaggtg |
4579447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4516474 - 4516331
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
4516474 |
gctgatcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggt |
4516375 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||||||| |||||||||| |||||||| || ||||||||||| |
|
|
| T |
4516374 |
tgttcatatgtgaacttggaaaaagtgattaaggaggtgctgct |
4516331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 4504383 - 4504504
Alignment:
| Q |
8 |
aatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |||| || |||||||||| |
|
|
| T |
4504383 |
aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcat |
4504482 |
T |
|
| Q |
108 |
atatgaacttggacaaagtgat |
129 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
4504483 |
acatgaacttggacaaagtgat |
4504504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 4563860 - 4563727
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||| | |||||||||| |
|
|
| T |
4563860 |
gtcaatgaattgatgtcaggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgtt |
4563761 |
T |
|
| Q |
105 |
catatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |
|
|
| T |
4563760 |
catacatgaacttggacaaagtgatcaaggaggt |
4563727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 4480841 - 4480709
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||||||||||| ||| ||||||||||| ||||| || |||||||| |
|
|
| T |
4480841 |
tcaatgaattgttggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttc |
4480742 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
||| |||||||||||||||||||| || ||||| |
|
|
| T |
4480741 |
atacatgaacttggacaaagtgattaaggaggt |
4480709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 4490339 - 4490462
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| | |||||||||||||| || ||| |||| |
|
|
| T |
4490339 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttc |
4490438 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgat |
129 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
4490439 |
atacatgaacttggacaaagtgat |
4490462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 4571123 - 4570988
Alignment:
| Q |
3 |
tggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttg |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
4571123 |
tggtcaatgaattgatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttg |
4571024 |
T |
|
| Q |
103 |
ttcatatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||| |
|
|
| T |
4571023 |
ttcatacatgaacttggaaaaagtgattaaggaggt |
4570988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 4598324 - 4598186
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
4598324 |
gctggtcaacgaattgatgtcgggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggt |
4598225 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtg |
139 |
Q |
| |
|
|||||||| |||||||| || |||||||| || |||||| |
|
|
| T |
4598224 |
tgttcatacatgaacttagagaaagtgattaaggaggtg |
4598186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 4557276 - 4557141
Alignment:
| Q |
3 |
tggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttg |
102 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||| ||| || ||||| ||||||| |||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
4557276 |
tggtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttg |
4557177 |
T |
|
| Q |
103 |
ttcatatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
|||||| ||||| ||||| |||||||| || ||||| |
|
|
| T |
4557176 |
ttcatacatgaatttggaaaaagtgattaaggaggt |
4557141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 4560658 - 4560516
Alignment:
| Q |
2 |
ctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggtt |
101 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||| ||||||| |||||||||| | |||||||||| ||||||| |
|
|
| T |
4560658 |
ctggtcaatgaattgatgtcctgagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggtt |
4560559 |
T |
|
| Q |
102 |
gttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||||| ||||||||||| |||||||| || |||||| |||| |
|
|
| T |
4560558 |
gttcatacatgaacttggagaaagtgattaaggaggtgttgct |
4560516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 4574460 - 4574318
Alignment:
| Q |
2 |
ctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggtt |
101 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||| |||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
4574460 |
ctggtcaatgaattgatgtccggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggtt |
4574361 |
T |
|
| Q |
102 |
gttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||||| | |||||||| |||||||| || |||||| |||| |
|
|
| T |
4574360 |
gttcatacacaaacttggagaaagtgattaaggaggtgttgct |
4574318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 3171889 - 3171757
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| |||||||| || ||| || |||||||| |
|
|
| T |
3171889 |
tcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttc |
3171790 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
||| ||||||||||| |||||||| || ||||| |
|
|
| T |
3171789 |
atacatgaacttggataaagtgattaaggaggt |
3171757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 4515104 - 4515243
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||| |||| || || | || |
|
|
| T |
4515104 |
gtcaatgaattgatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtctt |
4515203 |
T |
|
| Q |
105 |
catatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| |||| |
|
|
| T |
4515204 |
catacttgaacttggacaaagtgatcaaggaggtgttgct |
4515243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4617175 - 4617050
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||| |||||||| |||| | ||||| |||||||||||||||| ||||||||| || ||||||||||||||||| |||||| |||| |||||||| ||| |
|
|
| T |
4617175 |
gctgatcaatgaagtgatagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggt |
4617076 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagt |
126 |
Q |
| |
|
|||||||| ||||||||| ||||||| |
|
|
| T |
4617075 |
tgttcatacatgaacttgaacaaagt |
4617050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 4469952 - 4469831
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| |||||| ||||| || ||||| |||||||||| ||||||||| || ||||| |||||| || |
|
|
| T |
4469952 |
gtcaatgaattgatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgttt |
4469853 |
T |
|
| Q |
105 |
catatatgaacttggacaaagt |
126 |
Q |
| |
|
|||| | ||||||||||||||| |
|
|
| T |
4469852 |
catacaagaacttggacaaagt |
4469831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 4461274 - 4461151
Alignment:
| Q |
3 |
tggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttg |
102 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||||| || || || |||||||||| ||||||||| || ||||| |||||| |
|
|
| T |
4461274 |
tggtcaacgaattgatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgt |
4461175 |
T |
|
| Q |
103 |
ttcatatatgaacttggacaaagt |
126 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
4461174 |
ttcatacaagaacttggacaaagt |
4461151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 4493107 - 4492977
Alignment:
| Q |
2 |
ctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggtt |
101 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| || |||||| ||| || | |||||||| |||||||| ||||||||||| ||| || |||| |
|
|
| T |
4493107 |
ctggtcaatgagattatggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggtt |
4493008 |
T |
|
| Q |
102 |
gttcatatatgaacttggacaaagtgatcaa |
132 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
4493007 |
gttcatacatgaacttggacaaagtgatcaa |
4492977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4568202 - 4568078
Alignment:
| Q |
8 |
aatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaa---gaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
|||||||| ||||||||| |||||||||| || |||||||||||||| | ||||||||||| |||||| ||| ||||||| ||||| || | || || |
|
|
| T |
4568202 |
aatgaattaatggtgggacagaaaggaaaaaagatgaggcaaaaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattctt |
4568103 |
T |
|
| Q |
105 |
catatatgaacttggacaaagtgat |
129 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
4568102 |
catacatgaacttggacaaagtgat |
4568078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 4613871 - 4613921
Alignment:
| Q |
154 |
ttatgcaaagagtttcttattgaatttaagtgatgatgtaaatgaactgat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613871 |
ttatgcaaagagtttcttattgaatttaagtgatgatgtaaatgaactgat |
4613921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 4267149 - 4267270
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||||| | | |||||||||| |||||| || ||| |||| ||||| || |||| || |
|
|
| T |
4267149 |
gtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggttttt |
4267248 |
T |
|
| Q |
105 |
catatatgaacttggacaaagt |
126 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
4267249 |
catacatgaacttggacaaagt |
4267270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4506010 - 4505867
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
||||||| ||||| | ||||| |||||||||||||| || |||||| |||||| || |||||||| |||| ||| ||||||| || ||||| || ||| |
|
|
| T |
4506010 |
gctggtcgatgaaattatggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggt |
4505911 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||||| ||||||||||||||||| || || |||||| |||| |
|
|
| T |
4505910 |
tgttcattcatgaacttggacaaagttattaaggaggtgttgct |
4505867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 4626099 - 4625970
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||| |||||||| ||||| || |||||||| |||||||||||||| || ||||||||||||||||| |||||| ||| || || || |||||||| |
|
|
| T |
4626099 |
tcaatgcattgatggcaggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttc |
4626000 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgatcaatga |
135 |
Q |
| |
|
||| ||||| |||| ||| |||| ||||| |
|
|
| T |
4625999 |
atacatgaatatggataaactgattaatga |
4625970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 4299725 - 4299862
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | || ||||| |||||||||| ||||| |||||| |||||| |||| | ||||| ||| |
|
|
| T |
4299725 |
gctgatcaatgaattgatggtgggagagaaaggagataagatgagacaaaaggcaagggagtt------gaaggcagaggagaacactaatccaggtggt |
4299818 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
||||| || ||||||||||||||||| || || ||||| ||||| |
|
|
| T |
4299819 |
tgttcgtacatgaacttggacaaagttattaaggaggttctgct |
4299862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4601942 - 4601799
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||| |||||||| |||| | ||||| ||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||| ||| |||| ||| ||| |
|
|
| T |
4601942 |
gctgatcaatgaagtgatagccggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggt |
4601843 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
|||||||| | |||| |||||||||| || || |||||| |||| |
|
|
| T |
4601842 |
tgttcatacaagaacctggacaaagttattaaggaggtgttgct |
4601799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 4256596 - 4256716
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||||||||||| || || |||||||||||| | ||| || |||| || |||| ||| ||| |
|
|
| T |
4256596 |
tcaatgaattgatgtcgggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattc |
4256695 |
T |
|
| Q |
106 |
atatatgaacttggacaaagt |
126 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
4256696 |
attgatgaacttggacaaagt |
4256716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 4622290 - 4622170
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||| |||||||| || ||||||||| ||||||| || ||| || || || || |||||||| |
|
|
| T |
4622290 |
tcaatgaattgatgtcgggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttc |
4622191 |
T |
|
| Q |
106 |
atatatgaacttggacaaagt |
126 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
4622190 |
atacaacaacttggacaaagt |
4622170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 4260162 - 4260258
Alignment:
| Q |
30 |
aaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagt |
126 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||| |||||| |||||| |||| || ||| |||| ||||| ||||||||||||||||| |
|
|
| T |
4260162 |
aaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagt |
4260258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 4392052 - 4392142
Alignment:
| Q |
48 |
aaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| |||| || |||| ||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
4392052 |
aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggt |
4392142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 4606941 - 4606998
Alignment:
| Q |
72 |
aggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat |
129 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| |||||| ||||||||||| |||||||| |
|
|
| T |
4606941 |
aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgat |
4606998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 20863822 - 20863965
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||||| ||||| | |||| |
|
|
| T |
20863822 |
gctggtaaatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggt |
20863921 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagtgatcaatgaggtgctgct |
144 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
20863922 |
ggttcatatatgaacttggacaaagtgattaaggaggtgttgct |
20863965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 1674374 - 1674251
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||| || || |||||||||||||| |||||| |||| |||||||| |||||||| |
|
|
| T |
1674374 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttc |
1674275 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgat |
129 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
1674274 |
atacatgaacttggacaaagtgat |
1674251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 16686248 - 16686374
Alignment:
| Q |
3 |
tggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| || | | ||||| ||| || ||| ||||||| || ||||| |
|
|
| T |
16686248 |
tggtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttg |
16686347 |
T |
|
| Q |
103 |
ttcatatatgaacttggacaaagtgat |
129 |
Q |
| |
|
|||||| ||||||||||| |||||||| |
|
|
| T |
16686348 |
ttcatacatgaacttggaaaaagtgat |
16686374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 28000083 - 28000206
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||| |||| |||||||| |||||||| |
|
|
| T |
28000083 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttc |
28000182 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgat |
129 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
28000183 |
atacatgaacttggacaaagtgat |
28000206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 24103148 - 24103027
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |||||||| | ||||| ||||||||||| || ||| |||| ||| | || |||| || |
|
|
| T |
24103148 |
gtcaatgaattgatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggttttt |
24103049 |
T |
|
| Q |
105 |
catatatgaacttggacaaagt |
126 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
24103048 |
catacatgaacttggacaaagt |
24103027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 3702 - 3823
Alignment:
| Q |
5 |
gtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgtt |
104 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||| |||||| |||| |||||||| ||| ||| |
|
|
| T |
3702 |
gtcaatgaattgacggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt |
3801 |
T |
|
| Q |
105 |
catatatgaacttggacaaagt |
126 |
Q |
| |
|
|||| |||||| |||||||||| |
|
|
| T |
3802 |
catacatgaacctggacaaagt |
3823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 4670 - 4802
Alignment:
| Q |
6 |
tcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttc |
105 |
Q |
| |
|
|||||||||||||| |||||| ||||||| ||| |||||||||||||| || ||||||||||||||||| |||||| |||| || | || || ||||| |
|
|
| T |
4670 |
tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc |
4769 |
T |
|
| Q |
106 |
atatatgaacttggacaaagtgatcaatgaggt |
138 |
Q |
| |
|
||| |||||||||||||||||||| || ||||| |
|
|
| T |
4770 |
atacatgaacttggacaaagtgattaaggaggt |
4802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 1281238 - 1281139
Alignment:
| Q |
30 |
aaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat |
129 |
Q |
| |
|
|||||||||| ||||| ||||||| || || ||||||||| |||||||||| |||| ||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
1281238 |
aaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgat |
1281139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3086573 - 3086448
Alignment:
| Q |
1 |
gctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| |||||||| || || ||| |||| || || ||| |
|
|
| T |
3086573 |
gctgatcaatgaattgatggtgggagataaaggaaagaagatgaggcaaaatgtcgcagagttaaagaagaaagcagaagagaacaccagtatcggtggt |
3086474 |
T |
|
| Q |
101 |
tgttcatatatgaacttggacaaagt |
126 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
3086473 |
tgttcatacatgaacttggacaaagt |
3086448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University