View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11482_low_74 (Length: 215)
Name: NF11482_low_74
Description: NF11482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11482_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27815495 - 27815312
Alignment:
| Q |
18 |
aatcttgtcatttgtaacatggaagatgccctgtttgttttacaatagagtatgacgcagtccaactctgtcatataattctctcattatttaaattgtt |
117 |
Q |
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| T |
27815495 |
aatcttgtcatttgtaacatggaagatgccctgtttgttttacaatagagtatgacgcagtccaactctgtcatataattctctcattatttaaattgtt |
27815396 |
T |
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| Q |
118 |
tagaaactaatcatttgattactgctttaatttcaaaatttaagaccatattttcagctctctccattaaaccatcaccatgat |
201 |
Q |
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| T |
27815395 |
tagaaactaatcatttgattactgctttaatttcaaaatttaagaccatattttcagctctctccattaaaccatcaccatgat |
27815312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 27807648 - 27807528
Alignment:
| Q |
77 |
gtccaactctgtcatataattctctcattatttaaattgtttagaaactaatcatttgattactgctttaatttcaaaatttaagaccatattttcagct |
176 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||||| | |||| || |
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| T |
27807648 |
gtccaactccctcatataattctctgattatttaaattgtttagaaactaattatctgattaccactctaatttcaaaatttaagaccaaaatttccact |
27807549 |
T |
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| Q |
177 |
ctctccattaaaccatcacca |
197 |
Q |
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| T |
27807548 |
atctccattaatccatcacca |
27807528 |
T |
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