View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11483_low_1 (Length: 750)
Name: NF11483_low_1
Description: NF11483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11483_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 191 - 735
Target Start/End: Original strand, 11399876 - 11400421
Alignment:
| Q |
191 |
tgttaatgtttctctgagttttttatacttaatttccaacaacaaa-gtttcataggacacaaagaaccgcattctccagatttctgtaattattaccaa |
289 |
Q |
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| T |
11399876 |
tgttaatgtttctctgagttttttatacttaatttccaacaacaaaagtttcataggacacaaagaaccgcattctccagatttctgtaattattaccaa |
11399975 |
T |
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| Q |
290 |
agttgaaaacagagattctacttaggtgtgtgcgctgtgtctgttacatttagttaacattttcctagtttaaaggaggttatggcaacaagccaacaat |
389 |
Q |
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| T |
11399976 |
agttgaaaacagagattctacttaggtgtgtgcgctgtgtctgttacatttagttaacattttcctagtttaaaggaggttatggcaacaagccaacaat |
11400075 |
T |
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| Q |
390 |
ccaattcatgtatagttgtgcttaaaagcaatattgatcatgtagactttacagagttatcacacattttattgatttatcaaagcacaatacatatatt |
489 |
Q |
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| T |
11400076 |
ccaattcatgtataggtgtgcttaaaagcaatattgatcatgtagactttacagagttatcacacattttattgatttatcaaagcacaacacatatatt |
11400175 |
T |
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| Q |
490 |
cattaatctactctaatcaaatatgtgtgtttccatggagaagacttgtttggaaatttgaccaaggaagaagaggaagaaaccgagagaattttgagga |
589 |
Q |
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| T |
11400176 |
cattaatctactctaatcaaatatgtgtgtttccatggagaagacttgtttggaaatttgaccaaggaagaagaggaagaaaccgagagaattttgagga |
11400275 |
T |
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| Q |
590 |
atgcaaggaggcgcaagaggaagcaacgtaattctataataaacattctttgaaggtaacaagacttcaaactcctacttccttgcatcatactcttttt |
689 |
Q |
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| T |
11400276 |
atgcaaggaggcacaagaggaagcaacgtaattctataataaacattctttgaaggtaacaagacttcaaactcctacttccttgcatcatactcttttt |
11400375 |
T |
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| Q |
690 |
ctcggtttaaaatatttggtggattcctcttgtttgatcattgatg |
735 |
Q |
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| T |
11400376 |
ctcggtttaaaatatttggtggattcctcttgtttgatcattgatg |
11400421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 11399736 - 11399879
Alignment:
| Q |
5 |
ccaaatggagggagctaagtttgttacaacagatggacatgcagcggttaggaggagtgcaaggaagagactccctaaccaaatgatggatgattttgtg |
104 |
Q |
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| T |
11399736 |
ccaaatggagggagctaagttggttacaacagatggacatgcagcggttaggaggagtgcaaggaagagactccctaaccaaatgatggatgattttgtg |
11399835 |
T |
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| Q |
105 |
tgcaaagggtataggaaaaggaataggagaaaaaagagcatgtt |
148 |
Q |
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| T |
11399836 |
tgcaaagggtataggaaaaggaataggagaaaaaagagcatgtt |
11399879 |
T |
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