View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11483_low_2 (Length: 544)
Name: NF11483_low_2
Description: NF11483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11483_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 533
Target Start/End: Original strand, 2048298 - 2048816
Alignment:
| Q |
23 |
aacttggtactgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatctcttctgatttctaattctaatgcatatctatataaga |
122 |
Q |
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| T |
2048298 |
aacttagtactgctttgtggagttgaaaattattactttggtatttgtgaatcattttgatctcttctgatttttaattctaatgcatatctatataaga |
2048397 |
T |
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| Q |
123 |
cgctatctgatcctagctagttatactctggaattagatatacctggttccaccttgaataaaaaatcagcttcccaccttgttatatattttgttcaat |
222 |
Q |
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| T |
2048398 |
agtcatgtgatcctagctagttatactctgaatttagatatac-tagttccactttgaataaaaaa-cagcatcc-agctagttatatattatgttcaat |
2048494 |
T |
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| Q |
223 |
ctatgtacacaattcctaatatttgctcctgtatgtcaaagatcactagca------ccaacatcattaggcgccttattat-atgaataattacatgca |
315 |
Q |
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| T |
2048495 |
ctatgtacacagttcctaatatttgctcctgtatatcaaagatcactagcagtagcaccaacatcattaggcaccttattattatgaatatttacatgca |
2048594 |
T |
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| Q |
316 |
aagatcactggcaccgtatcattacgttcctaattttatgaatatttacatgtagttatgtctagctatcttttt-attttatttagattacaactctcc |
414 |
Q |
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| T |
2048595 |
aagatcactagcgtcatatcattatgttcctaattttatgaatatttacatgtagttatgtctagccatcttttttattttatttagattgcatctctcc |
2048694 |
T |
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| Q |
415 |
---ctctttttattgagtatttgctttgtggaaaactcaaataaacaaaaggtgaaggttggaaaaacttgcagtggttcaactcttgaattgacactcg |
511 |
Q |
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| T |
2048695 |
tccctctttttattgggtatttgctttgtggaaaactcaaataaacaaaagttggaggttggaaaaacttacagtggttcgactcttgaatcgacactcg |
2048794 |
T |
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| Q |
512 |
gcatcctatctatgttgttcat |
533 |
Q |
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| T |
2048795 |
gcatcctatctatgttgttcat |
2048816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 2083207 - 2083258
Alignment:
| Q |
33 |
tgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatc |
84 |
Q |
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| T |
2083207 |
tgctttgtggagttgaaaacaattacattggtatttgagaatcattttgatc |
2083258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 2054612 - 2054678
Alignment:
| Q |
166 |
ctggttccaccttgaataaaa-aatcagcttcccaccttgttatatattttgttcaatctatgtaca |
231 |
Q |
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| T |
2054612 |
ctggttccaccttgaataaaaaaatcagcatcctaactagttatatattttgttcaatctatgtaca |
2054678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 366
Target Start/End: Original strand, 2054722 - 2054793
Alignment:
| Q |
295 |
ttatatgaataattacatgcaaagatcactggcaccgtatcattacgttcctaattttatgaatatttacat |
366 |
Q |
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| T |
2054722 |
ttatatgaatatttacatgcaaagatcacttgcaccatatcatcatgttcttatttatatgaatatttacat |
2054793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 2062919 - 2062960
Alignment:
| Q |
204 |
gttatatattttgttcaatctatg--tacacaattcctaata |
243 |
Q |
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| T |
2062919 |
gttatatattttgttcaatctatgtctacacaattcctaata |
2062960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 2106992 - 2107045
Alignment:
| Q |
31 |
actgctttgtggagttgaaaacaattaccttggtatttgagaatcattttgatc |
84 |
Q |
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| T |
2106992 |
actgctttgtgaagttgaaaacaattagattggaatttggggatcattttgatc |
2107045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 2054523 - 2054571
Alignment:
| Q |
35 |
ctttgtggagttgaaaacaattaccttggtatttgagaatcattttgat |
83 |
Q |
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| T |
2054523 |
ctttgtggatttgcaaacaattgctttagtatttgagaatcattttgat |
2054571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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