View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11483_low_3 (Length: 418)
Name: NF11483_low_3
Description: NF11483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11483_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 47151122 - 47151513
Alignment:
| Q |
19 |
tttctattcagctttcgttttcagaatgagaagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47151122 |
tttctattcagctttcgttttcagaatgagaagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatg |
47151221 |
T |
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| Q |
119 |
ttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaactaatttgttttgaaattttgtttag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47151222 |
ttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaact---ttgttttgaaattttgtttag |
47151318 |
T |
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| Q |
219 |
gttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgagtccagcaacacctc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47151319 |
gttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgaatccagcaacacctc |
47151418 |
T |
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| Q |
319 |
tttcttttattgattttatcataagaagacttggattgaaagatcatctaatttgttgggagttccttaagagatgtgaaggtgttcttctctct |
413 |
Q |
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| T |
47151419 |
tttcttttattgattttatcataagaagacttggattgaaagaccatctaatttgttgggagtttcttaagagatgtgaaggtgttcttctctct |
47151513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 39337226 - 39337325
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgtt |
148 |
Q |
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| T |
39337226 |
aagccttggatgactcagctcactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgtt |
39337325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 23703200 - 23703270
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
119 |
Q |
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| T |
23703200 |
aagccatggatcactcaggttactgctgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
23703270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 55018597 - 55018667
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
119 |
Q |
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| T |
55018597 |
aagccatggatcactcagcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
55018667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 35785936 - 35785838
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
147 |
Q |
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| T |
35785936 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaatccatgtgccacttcttttggattttcaagtatgt |
35785838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 38157864 - 38157930
Alignment:
| Q |
53 |
catggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
119 |
Q |
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| T |
38157864 |
catggatcactcatcttactgttgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
38157930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 7107762 - 7107834
Alignment:
| Q |
75 |
tgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
147 |
Q |
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| T |
7107762 |
tgttgcttgtttgtctcttgctgctaaaatggaagaaacccatgtgccacttcttttggattttcaagtatgt |
7107834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 21143311 - 21143409
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagatcttcaagtatgt |
147 |
Q |
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||||||||||| |||||| || | | |||||||||| | ||||||||||||||||||||||| || ||||| || ||| | | ||| ||||||||||| |
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| T |
21143311 |
aagccatggatcactcagattactgttgttgcttgtttgtctcttgctgctaaaatggaagaaactcatgtgccacttcttttggattttcaagtatgt |
21143409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 48851101 - 48850989
Alignment:
| Q |
36 |
ttttcagaatgagaagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgttcctcttttgctagat |
135 |
Q |
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|||||| || |||||||||||||||| |||||||| |||||| |||| | ||| | ||||||||| | ||||| || || ||||||||| | |||| |
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| T |
48851101 |
ttttcaaaaggagaagccatggatgattcagcttgttgctgttacttgcatctctttagctgctaaagttgaagaaactcaagttcctcttctcttagac |
48851002 |
T |
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| Q |
136 |
cttcaagtatgtt |
148 |
Q |
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| T |
48851001 |
cttcaagtatgtt |
48850989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 52794533 - 52794464
Alignment:
| Q |
49 |
aagccatggatgactcagcttgcagctgttgcttgtctttctcttgctgctaaaatggaagagacccatgt |
119 |
Q |
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||||||||||| |||||| || | | |||| ||||| | ||||||||||||||||||||||| |||||||| |
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| T |
52794533 |
aagccatggatcactcagattcctg-tgtttcttgtttgtctcttgctgctaaaatggaagaaacccatgt |
52794464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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