View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11483_low_7 (Length: 249)

Name: NF11483_low_7
Description: NF11483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11483_low_7
NF11483_low_7
[»] chr7 (3 HSPs)
chr7 (1-235)||(35703266-35703500)
chr7 (6-82)||(22582180-22582256)
chr7 (29-82)||(35323887-35323940)
[»] chr5 (7 HSPs)
chr5 (6-93)||(9503852-9503939)
chr5 (6-93)||(3627692-3627779)
chr5 (6-93)||(32090407-32090494)
chr5 (6-93)||(34854261-34854348)
chr5 (6-90)||(9507837-9507921)
chr5 (5-82)||(43095278-43095355)
chr5 (6-72)||(2357514-2357580)
[»] chr2 (12 HSPs)
chr2 (6-93)||(21794333-21794420)
chr2 (5-93)||(45485630-45485718)
chr2 (6-93)||(43081477-43081564)
chr2 (6-93)||(45496896-45496983)
chr2 (6-93)||(45504638-45504725)
chr2 (5-93)||(13273486-13273574)
chr2 (7-93)||(1645210-1645297)
chr2 (6-82)||(4285247-4285323)
chr2 (6-93)||(5983632-5983720)
chr2 (6-82)||(5989601-5989677)
chr2 (55-93)||(18164135-18164173)
chr2 (29-71)||(31468930-31468972)
[»] chr8 (2 HSPs)
chr8 (6-93)||(11096328-11096415)
chr8 (6-82)||(14685510-14685586)
[»] chr6 (4 HSPs)
chr6 (6-93)||(7501212-7501299)
chr6 (6-93)||(31888695-31888782)
chr6 (6-82)||(367160-367236)
chr6 (6-82)||(7534345-7534421)
[»] chr3 (5 HSPs)
chr3 (10-93)||(32813774-32813857)
chr3 (6-93)||(47744022-47744109)
chr3 (6-90)||(55418592-55418676)
chr3 (6-82)||(27237802-27237878)
chr3 (26-93)||(531393-531460)
[»] chr4 (4 HSPs)
chr4 (6-82)||(53011374-53011450)
chr4 (12-82)||(28571346-28571416)
chr4 (6-75)||(53008487-53008556)
chr4 (6-49)||(56563270-56563313)
[»] chr1 (2 HSPs)
chr1 (7-82)||(10917095-10917170)
chr1 (5-52)||(3709510-3709557)
[»] scaffold0014 (1 HSPs)
scaffold0014 (6-71)||(34602-34667)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35703500 - 35703266
Alignment:
Q  1 tgtgctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttctagaagtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  35703500 tgtgctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatagaattgagattctgggtttctagaagtaa 35703401  T
Q  101 ccattcatcacatggccaaatggtgttcaacaacaattttgcaatttccatgtaattttgtagtgtcaatgatcgtcttttttgatgtggccagtggacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35703400 ccattcatcacatggccaaatggtgttcaacaacaattttgcaatttccatgtaattttgtagtgtcaatgatcgtcttttttgatgtggccagtggacc 35703301  T
Q  201 cataatttttgccatgaaaatcactcaccggattc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  35703300 cataatttttgccatgaaaatcactcaccggattc 35703266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 22582180 - 22582256
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  22582180 tgatggaacaatgtatgaaattagaatgaaaccagcatttaaaattgagttcaattgaagaagatgaaattgagatt 22582256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 35323887 - 35323940
Alignment:
Q  29 gaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  35323887 gaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatt 35323940  T

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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 9503939 - 9503852
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9503939 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttcta 9503852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 3627779 - 3627692
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  3627779 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgtgttcaattgaagaagatgaaattgagattatgggtttcta 3627692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 32090494 - 32090407
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32090494 tgatggaacaatgaatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttcta 32090407  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 34854348 - 34854261
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  34854348 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactatgttcaattgaagaagatggaattgagattctgggtttcta 34854261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 9507921 - 9507837
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggttt 90  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9507921 tgatgtaacaatgtatgaaattagaatgaaaccaacacttaaaactgagttcaattgaagaagatggaattgagattctgggttt 9507837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 43095355 - 43095278
Alignment:
Q  5 ctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  43095355 ctgatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagattgaattgagatt 43095278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 2357514 - 2357580
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatgg 72  Q
    |||||||||||||||||||| | ||||||||| | |||||||||||| |||||||||||||||||||    
T  2357514 tgatggaacaatgtatgaaaattgaatgaaactaacacttaaaactgtgttcaattgaagaagatgg 2357580  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 21794333 - 21794420
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21794333 tgatggaacaatgtatgaaattagaatgaaactagcacttaaaactgtgttcaattgaagaagatggaattgagattatgggtttcta 21794420  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 45485630 - 45485718
Alignment:
Q  5 ctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  45485630 ctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggagttgagattctggatttcta 45485718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 43081477 - 43081564
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43081477 tgatcgaacaatgtatgaaattaaaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattctgggtttcta 43081564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 45496896 - 45496983
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  45496896 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattctgggtttcta 45496983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 45504638 - 45504725
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  45504638 tgatggaacaatgtatgaaattagaatgaaaacaacacttaaaactgagttcaattgaagaagatggagttgagattctgggtttcta 45504725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 13273574 - 13273486
Alignment:
Q  5 ctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||||||||| ||| ||||||    
T  13273574 ctgatggaacaatgtatgaaattagaatgaaaccaacatttaaaactgtgttcaattgaagaagatgaaattgagattctggatttcta 13273486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 1645297 - 1645210
Alignment:
Q  7 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattat-gggtttcta 93  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||    
T  1645297 gatggaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaatagaagaagatggaattgagattatagggtttcta 1645210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 4285323 - 4285247
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||||||||||||||||| | ||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  4285323 tgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagatt 4285247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 5983720 - 5983632
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattat-gggtttcta 93  Q
    ||||||| |||||||||||| | ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| |||||||||    
T  5983720 tgatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagattatagggtttcta 5983632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 5989677 - 5989601
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||||||||||||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  5989677 tgatggaacaatgtatgaaaattgaaggaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatt 5989601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 18164173 - 18164135
Alignment:
Q  55 ttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  18164173 ttcaattgaagaagatggaattgagattctgggtttcta 18164135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 31468930 - 31468972
Alignment:
Q  29 gaatgaaaccagcacttaaaactgagttcaattgaagaagatg 71  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  31468930 gaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 31468972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11096415 - 11096328
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  11096415 tgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatgatgggtttcta 11096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 14685586 - 14685510
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    ||||| |||||||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  14685586 tgatgaaacaatgtatgaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatt 14685510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 7501212 - 7501299
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7501212 tgatggaacaatgtatgaaattagaatgaaaccaacacctaaaactgtgttcaattgaagaagatggaattgagattctgggtttcta 7501299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 31888782 - 31888695
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||| || ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||    
T  31888782 tgatgaaaaaatgtatgaaattggaatgaaaccaacacttaaaactgggttcaattgaagaagatggaactgaaattttgggtttcta 31888695  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 367160 - 367236
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||| ||||||||||||||| | ||||||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  367160 tgatagaacaatgtatgaaaattgaatgaaaccaacatttaaaactgtgttcaattgaagaagatggaattgagatt 367236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 7534421 - 7534345
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||    
T  7534421 tgatggaacaatgtatgaaaattgaatgaaaccaacacttaaatctgtattcaattgaaaaagatggaattgagatt 7534345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 32813857 - 32813774
Alignment:
Q  10 ggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  32813857 ggaataatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatgaaattgagattctgggtttcta 32813774  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 47744109 - 47744022
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||    
T  47744109 tgatggaaaaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattaaagaagatggaattgagattatggatttcta 47744022  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 55418676 - 55418592
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggttt 90  Q
    ||||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||| |||||||    
T  55418676 tgatggaacaatgtatgaaattagaatgaaaccggtacttaaaattgtgttcaattgaagaagatggaattgagattctgggttt 55418592  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 27237878 - 27237802
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    ||||| |||||||||| ||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  27237878 tgatgcaacaatgtataaaaattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatggaattgagatt 27237802  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 531393 - 531460
Alignment:
Q  26 ttagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagattatgggtttcta 93  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||||    
T  531393 ttagaatgaaaccagcacttaaaactttgttcgattgaagaagatggaattgagattctgggtttcta 531460  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 53011450 - 53011374
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||    
T  53011450 tgatggaacaatgtatgaaattagaatgaaaccaacacttaaaactgtgttcaattgaagaagatgaaatagagatt 53011374  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 28571346 - 28571416
Alignment:
Q  12 aacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||    
T  28571346 aacaatgtatgaaattagaatgaaaccaacacttaaaactatgttcaattgaagaagatggaattgagatt 28571416  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 53008556 - 53008487
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaat 75  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| || |||| |||||||||||||||||    
T  53008556 tgatggaacaatgcatgaaattagaatgaaaccaacacttaaaattgtgttccattgaagaagatggaat 53008487  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 56563313 - 56563270
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaa 49  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  56563313 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaa 56563270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 10917170 - 10917095
Alignment:
Q  7 gatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatggaattgagatt 82  Q
    |||||| |||||||||||| | ||||||||||| ||||||||| || |||||||||||||||||||||||||||||    
T  10917170 gatggagcaatgtatgaaaattgaatgaaaccaacacttaaaattgtgttcaattgaagaagatggaattgagatt 10917095  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 3709510 - 3709557
Alignment:
Q  5 ctgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactg 52  Q
    ||||||||||||||||||||| | ||||||||||| || |||||||||    
T  3709510 ctgatggaacaatgtatgaaaattgaatgaaaccaacatttaaaactg 3709557  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 34667 - 34602
Alignment:
Q  6 tgatggaacaatgtatgaaattagaatgaaaccagcacttaaaactgagttcaattgaagaagatg 71  Q
    |||||||||| ||||| ||  | ||||||||||| |||||||||||| ||||||||||||||||||    
T  34667 tgatggaacagtgtataaagattgaatgaaaccaacacttaaaactgtgttcaattgaagaagatg 34602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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