View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11484_high_10 (Length: 275)

Name: NF11484_high_10
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11484_high_10
NF11484_high_10
[»] chr3 (24 HSPs)
chr3 (150-255)||(53809406-53809511)
chr3 (150-255)||(47766864-47766969)
chr3 (150-255)||(48253031-48253136)
chr3 (154-243)||(10339906-10339995)
chr3 (154-239)||(10301732-10301817)
chr3 (158-248)||(7271512-7271602)
chr3 (175-250)||(17345413-17345488)
chr3 (184-244)||(14744175-14744235)
chr3 (189-247)||(7921595-7921653)
chr3 (164-238)||(45422092-45422166)
chr3 (158-243)||(54750364-54750448)
chr3 (164-239)||(20486122-20486197)
chr3 (187-250)||(32980402-32980465)
chr3 (184-243)||(49380898-49380957)
chr3 (187-244)||(25585783-25585840)
chr3 (187-243)||(8372566-8372622)
chr3 (166-244)||(43345428-43345506)
chr3 (184-239)||(13621902-13621957)
chr3 (187-246)||(26797426-26797485)
chr3 (211-250)||(34123309-34123348)
chr3 (189-248)||(40896697-40896756)
chr3 (166-248)||(143104-143186)
chr3 (173-237)||(5122429-5122493)
chr3 (182-242)||(31638596-31638656)
[»] chr4 (29 HSPs)
chr4 (150-252)||(46795939-46796041)
chr4 (150-255)||(47667276-47667381)
chr4 (150-255)||(56001182-56001286)
chr4 (150-255)||(3528288-3528393)
chr4 (150-250)||(26631129-26631229)
chr4 (158-255)||(29665495-29665592)
chr4 (150-257)||(41348335-41348442)
chr4 (158-255)||(38554027-38554124)
chr4 (150-242)||(36846470-36846561)
chr4 (150-252)||(307713-307820)
chr4 (150-243)||(44499895-44499987)
chr4 (184-244)||(52137538-52137598)
chr4 (150-220)||(26376443-26376513)
chr4 (189-248)||(35348905-35348964)
chr4 (189-241)||(39056540-39056592)
chr4 (184-243)||(26495235-26495294)
chr4 (150-241)||(49895156-49895247)
chr4 (187-249)||(38417657-38417719)
chr4 (187-249)||(43418137-43418199)
chr4 (179-250)||(2292253-2292324)
chr4 (184-243)||(36244711-36244770)
chr4 (175-250)||(43895555-43895630)
chr4 (184-243)||(56157048-56157107)
chr4 (150-219)||(56086462-56086530)
chr4 (184-240)||(1521129-1521184)
chr4 (184-243)||(8363333-8363392)
chr4 (187-248)||(39591046-39591107)
chr4 (226-255)||(56297668-56297697)
chr4 (150-218)||(4872142-4872209)
[»] chr8 (30 HSPs)
chr8 (150-252)||(38086-38187)
chr8 (150-255)||(39516410-39516515)
chr8 (171-256)||(7770094-7770179)
chr8 (171-256)||(7777771-7777856)
chr8 (150-257)||(22621047-22621154)
chr8 (150-243)||(24191490-24191582)
chr8 (150-250)||(43203190-43203290)
chr8 (184-247)||(36757167-36757230)
chr8 (171-256)||(7795863-7795949)
chr8 (165-250)||(16362522-16362607)
chr8 (171-256)||(7815140-7815226)
chr8 (150-250)||(31844474-31844574)
chr8 (186-243)||(9853680-9853737)
chr8 (175-250)||(13514803-13514878)
chr8 (175-250)||(13604336-13604411)
chr8 (175-250)||(39323890-39323965)
chr8 (184-250)||(37274990-37275056)
chr8 (184-249)||(42793806-42793871)
chr8 (158-241)||(24306043-24306126)
chr8 (216-255)||(24068428-24068467)
chr8 (175-250)||(45395953-45396028)
chr8 (150-199)||(24068472-24068521)
chr8 (161-242)||(34616245-34616326)
chr8 (177-250)||(40251296-40251369)
chr8 (177-250)||(44102052-44102125)
chr8 (187-250)||(8397208-8397271)
chr8 (190-249)||(38697263-38697322)
chr8 (167-250)||(44607246-44607329)
chr8 (166-248)||(2075480-2075562)
chr8 (177-217)||(21671287-21671327)
[»] chr7 (25 HSPs)
chr7 (150-252)||(28326303-28326405)
chr7 (150-243)||(17288155-17288248)
chr7 (150-255)||(45721679-45721784)
chr7 (150-250)||(43442673-43442773)
chr7 (150-252)||(41515097-41515199)
chr7 (184-244)||(35296762-35296822)
chr7 (154-250)||(666832-666927)
chr7 (154-238)||(3330810-3330893)
chr7 (150-242)||(32653577-32653668)
chr7 (189-248)||(10955953-10956012)
chr7 (198-243)||(44376646-44376691)
chr7 (198-243)||(44385513-44385558)
chr7 (184-243)||(26146651-26146710)
chr7 (184-243)||(41329414-41329473)
chr7 (184-250)||(13446605-13446671)
chr7 (190-239)||(29589220-29589269)
chr7 (187-250)||(14107935-14107998)
chr7 (187-250)||(14417892-14417955)
chr7 (187-250)||(43931816-43931879)
chr7 (187-249)||(35483678-35483740)
chr7 (184-242)||(45089582-45089640)
chr7 (187-240)||(25532257-25532310)
chr7 (190-250)||(40926472-40926532)
chr7 (190-250)||(44114609-44114669)
chr7 (187-250)||(18670454-18670517)
[»] chr1 (23 HSPs)
chr1 (150-257)||(40110565-40110672)
chr1 (150-255)||(26803129-26803234)
chr1 (154-250)||(12667190-12667285)
chr1 (164-257)||(24516430-24516523)
chr1 (150-249)||(40533514-40533613)
chr1 (189-255)||(50679773-50679839)
chr1 (184-243)||(51446787-51446846)
chr1 (177-250)||(51217721-51217794)
chr1 (187-250)||(33941420-33941483)
chr1 (150-242)||(48528806-48528899)
chr1 (150-233)||(6048040-6048123)
chr1 (184-243)||(26287720-26287778)
chr1 (190-248)||(9417050-9417108)
chr1 (158-243)||(5611849-5611933)
chr1 (165-250)||(52076637-52076722)
chr1 (164-244)||(14429863-14429943)
chr1 (184-243)||(14479459-14479518)
chr1 (187-250)||(34654290-34654353)
chr1 (187-249)||(14765045-14765106)
chr1 (184-242)||(28051552-28051610)
chr1 (189-250)||(9210073-9210134)
chr1 (194-239)||(32459551-32459596)
chr1 (187-248)||(49292595-49292656)
[»] chr5 (19 HSPs)
chr5 (184-251)||(8188147-8188214)
chr5 (158-255)||(224511-224608)
chr5 (184-252)||(5975857-5975925)
chr5 (158-250)||(10736856-10736948)
chr5 (164-243)||(9219289-9219368)
chr5 (184-238)||(13519595-13519649)
chr5 (187-255)||(18695597-18695665)
chr5 (189-255)||(21389095-21389161)
chr5 (187-250)||(1273192-1273255)
chr5 (189-250)||(5384298-5384359)
chr5 (152-256)||(4124857-4124961)
chr5 (187-242)||(19827090-19827145)
chr5 (185-243)||(10978224-10978282)
chr5 (184-238)||(35047536-35047590)
chr5 (190-247)||(41905281-41905338)
chr5 (187-250)||(22812336-22812400)
chr5 (195-250)||(15857576-15857631)
chr5 (184-242)||(11796682-11796740)
chr5 (150-250)||(1103878-1103978)
[»] scaffold0084 (1 HSPs)
scaffold0084 (175-250)||(11809-11884)
[»] chr6 (8 HSPs)
chr6 (175-250)||(18773757-18773832)
chr6 (150-248)||(18242220-18242318)
chr6 (184-243)||(138150-138209)
chr6 (184-243)||(146171-146230)
chr6 (179-226)||(11968406-11968453)
chr6 (189-249)||(13279461-13279520)
chr6 (190-250)||(33807792-33807852)
chr6 (184-239)||(30232850-30232905)
[»] scaffold0687 (1 HSPs)
scaffold0687 (171-256)||(6497-6583)
[»] scaffold0219 (1 HSPs)
scaffold0219 (150-243)||(7007-7100)
[»] scaffold0046 (1 HSPs)
scaffold0046 (175-250)||(24753-24828)
[»] scaffold0025 (1 HSPs)
scaffold0025 (187-254)||(54690-54757)
[»] chr2 (17 HSPs)
chr2 (184-243)||(1147862-1147921)
chr2 (184-243)||(4919940-4919999)
chr2 (184-243)||(45699642-45699701)
chr2 (189-248)||(4830627-4830686)
chr2 (175-250)||(26205985-26206060)
chr2 (184-242)||(19397644-19397702)
chr2 (184-242)||(28610136-28610194)
chr2 (187-242)||(3533576-3533631)
chr2 (1-40)||(42672061-42672100)
chr2 (154-239)||(25569883-25569968)
chr2 (177-245)||(4513693-4513761)
chr2 (166-250)||(40174694-40174777)
chr2 (187-250)||(6707029-6707092)
chr2 (184-243)||(16289890-16289949)
chr2 (187-250)||(23178832-23178895)
chr2 (187-250)||(23590089-23590152)
chr2 (187-247)||(2717728-2717789)
[»] scaffold0098 (1 HSPs)
scaffold0098 (187-250)||(42296-42359)
[»] scaffold0114 (1 HSPs)
scaffold0114 (184-243)||(38653-38712)
[»] scaffold0290 (1 HSPs)
scaffold0290 (187-249)||(8483-8545)
[»] scaffold0024 (1 HSPs)
scaffold0024 (164-250)||(72913-72999)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 53809406 - 53809511
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||     
T  53809406 ttaggtgctgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaattatatcaaaaaatttagacattaaaaaactaacggagatgaca 53809505  T
Q  250 acatta 255  Q
    ||||||    
T  53809506 acatta 53809511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 47766864 - 47766969
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||     
T  47766864 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagaggacg 47766963  T
Q  250 acatta 255  Q
    ||||||    
T  47766964 acatta 47766969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 48253136 - 48253031
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||||  |||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||     
T  48253136 ttaggtgttgacagttcactattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaactaacggagatgact 48253037  T
Q  250 acatta 255  Q
    ||||||    
T  48253036 acatta 48253031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 10339906 - 10339995
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||| |||||||||| |||||||  |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  10339906 gtgctgacggttcactgttaaatacaatggacattcaatcaaatggttcaaatcaaatcaaaaaatttagacattaaaaaactaacggag 10339995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 10301732 - 10301817
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||| | |||||||||| |||||||  |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10301732 gtgctgatggttcactgttaaatacaatggacattcaatcaaatggttaaaatcaaatcaaaaaatttagacattaaaaaactaac 10301817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 7271512 - 7271602
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||||||||||| | | |||||||  ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  7271512 tgacgattcactataaaatacaatggacatgcaatcaaatggttaaaattaaatcaaaaagtttagacattaaaaaactaacggaggggac 7271602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 17345488 - 17345413
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| ||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||    
T  17345488 atacaatagacatgcaatcgaatggttcaaatcatattaaaaatattagacattaaaaaactaacggagaggacca 17345413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 14744235 - 14744175
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||    
T  14744235 acatgcaatcaatcggttaaaatcatatcaaaaaatttagacattaaaaaattaacggaga 14744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 7921595 - 7921653
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagagga 247  Q
    ||||| ||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  7921595 caatcgaatggttgaaatcatatcaaaaatattagacattaaaaaactaacggagagga 7921653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 45422092 - 45422166
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 238  Q
    ||||| ||| ||||||||| || ||||||||||||||||| |||||||||| ||  |||||||||||||||||||    
T  45422092 ttcacggtttgatacaatagacctgcaatcaaatggttaatatcatatcaagaatattagacattaaaaaactaa 45422166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 54750364 - 54750448
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||| |||||||| | ||||| |  |||| |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||    
T  54750364 tgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaatc-aaaaatttagacattaaaaaattaacggag 54750448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 20486197 - 20486122
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    |||||||||| ||||| |  || |||||||||||| |||||||||||| ||||  |||||||||||||||||||||    
T  20486197 ttcactgttatatacagtcgacctgcaatcaaatgattaaaatcatattaaaagttttagacattaaaaaactaac 20486122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 32980402 - 32980465
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||||||||||||||  ||||| ||||||||||||||||||| |||||    
T  32980402 tgcaatcgaatggttgaaatcatatcaaaaatgttagaaattaaaaaactaacggagatgacca 32980465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 49380898 - 49380957
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||    
T  49380898 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 49380957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 25585783 - 25585840
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||| ||||||| ||||||||||| |||  |||||||||||||||||||||||||    
T  25585783 tgcaatcgaatggttcaaatcatatcagaaatgttagacattaaaaaactaacggaga 25585840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 8372566 - 8372622
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||| ||||||| |||||||||||||||  ||| ||||||||||||||||||||    
T  8372566 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggag 8372622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 43345506 - 43345428
Alignment:
Q  166 cactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    |||| ||| ||| |||| || ||||||| |||||||  ||||||||||||||  ||| |||||||||||||||||||||    
T  43345506 cactcttaaatataatagacctgcaatcgaatggttggaatcatatcaaaaatattaaacattaaaaaactaacggaga 43345428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 13621902 - 13621957
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||||||||| || ||| ||||||||||||| |||| | ||||||||||||||    
T  13621902 acatgcaatcaaacggctaatatcatatcaaaaattttaaatattaaaaaactaac 13621957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 26797485 - 26797426
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagagg 246  Q
    ||||||||||||||| |||| ||||||||||  |||  ||||| ||||||||||||||||    
T  26797485 tgcaatcaaatggttgaaattatatcaaaaatattaatcattagaaaactaacggagagg 26797426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 34123348 - 34123309
Alignment:
Q  211 tcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  34123348 tcaaaaaatttagacattgaaaaactaacggaggggacca 34123309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 40896697 - 40896756
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    ||||||| |||||||||||| |||| |||  ||| |||||||||||||||||| ||||||    
T  40896697 caatcaagtggttaaaatcacatcataaatattatacattaaaaaactaacggcgaggac 40896756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 143104 - 143186
Alignment:
Q  166 cactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||| |||||||||||  || ||||||||| |||||||||||| |||| | |  ||| ||||||||||| |||||| ||||||    
T  143104 cactattagatacaatgaacctgcaatcaagtggttaaaatcacatcatacatattatacattaaaaaattaacggtgaggac 143186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 5122493 - 5122429
Alignment:
Q  173 agatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaacta 237  Q
    |||||||||  ||||| ||| |||  ||||||||||||| |||||  ||||||||||||||||||    
T  5122493 agatacaatggacatgtaattaaacagttaaaatcatataaaaaatattagacattaaaaaacta 5122429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 31638596 - 31638656
Alignment:
Q  182 atacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||| |||||| ||||||||||| |||||||||||| ||| |  |||| |||||||||||    
T  31638596 atacaagcaatccaatggttaaaagcatatcaaaaaaattatatcttaagaaactaacgga 31638656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 46795939 - 46796041
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| |||| |||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46795939 ttaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 46796038  T
Q  250 aca 252  Q
    |||    
T  46796039 aca 46796041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 47667381 - 47667276
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||    
T  47667381 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacgcagaggacc 47667282  T
Q  250 acatta 255  Q
    | ||||    
T  47667281 atatta 47667276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 56001182 - 56001286
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||    
T  56001182 ttaggtgccgacgattcactattagatacaatggacatgcaatcaaatggttaaaatcacat-aaaaaaattagacattaaaaaactaacgaagaggacc 56001280  T
Q  250 acatta 255  Q
    ||||||    
T  56001281 acatta 56001286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 3528393 - 3528288
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||||||     
T  3528393 ttaggtgttgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacataaaaaaaattagacattaaaaaactaatggagaggact 3528294  T
Q  250 acatta 255  Q
    ||||||    
T  3528293 acatta 3528288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 26631129 - 26631229
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||  || ||||||| |||||    
T  26631129 ttaggtgctgatgattcactgttaaatacaatagacatgcaatcaagtggttaaaatcaaatcaaaaaatttagacattaaaggacaaacggaggggacc 26631228  T
Q  250 a 250  Q
    |    
T  26631229 a 26631229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 29665495 - 29665592
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    ||||| |||||  |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  29665495 tgacggttcacaattagatacaatggacatgcaatcaaatggttaaaatcacatcaaaaaatttagacattaaaaaattaacggagatgactacatta 29665592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 41348442 - 41348335
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||| | ||||| |||| |||||||  ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||  |||||||||    
T  41348442 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaaaaattttatacattaaaaaactaatagagaggacc 41348343  T
Q  250 acattaat 257  Q
    ||||||||    
T  41348342 acattaat 41348335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 38554124 - 38554027
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    ||||| |||||| ||| |||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  38554124 tgacggttcactattaaatacaatggacgtgcgatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggagatgactacatta 38554027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 36846470 - 36846561
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||| ||||| |||||||||| ||| |||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  36846470 ttaggtgttgacggttcactgttaaatataatggacatgcaatcaaatggttaaaatcaaatcaaaaaatttagacatt-aaaaactaacgga 36846561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 307713 - 307820
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatata-----catgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||||||||| |||||| ||| |||||||| |     |||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  307713 ttaggtgctgacggttcactattaaatacaatacaatggacatgcaatcatatggttaaaatcatatcaaaaaatttaaacattaaaaaaccaacggaga 307812  T
Q  245 ggaccaca 252  Q
     |||||||    
T  307813 tgaccaca 307820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 44499895 - 44499987
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |||||| | |||||||||  ||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||    
T  44499895 ttaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatatagacattaacaaactaacggag 44499987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 52137598 - 52137538
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  52137598 acatgcaatcaaacggttaaaatcatatcaaaaaatttagacattgaaaaactaacggaga 52137538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 26376513 - 26376443
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatt 220  Q
    ||||||||| ||| || ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26376513 ttaggtgctcacggttaactattagatacaatgtacatgcaatcaaatggttaaaatcacatcaaaaaatt 26376443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 35348964 - 35348905
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  35348964 caatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacggaggggac 35348905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 39056592 - 39056540
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgg 241  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  39056592 caatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagctaacgg 39056540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 26495294 - 26495235
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| || ||| ||||||||||||| |||| ||||||||||||||||||||    
T  26495294 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 26495235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 49895247 - 49895156
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgg 241  Q
    ||||||| ||| | |||||| ||||||||||   || |||||||||||||||| ||||| ||||||||| |||| |||||| ||||||||||    
T  49895247 ttaggtgttgatggttcactattagatacaacggacctgcaatcaaatggttagaatcaaatcaaaaaaattaggcattaagaaactaacgg 49895156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 38417719 - 38417657
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||| |||| ||||||||| ||||||| || ||||||||| ||||||||||||||||    
T  38417719 tgcaatcaaacggttgaaatcatattaaaaaatctaaacattaaaatactaacggagaggacc 38417657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 43418199 - 43418137
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||||| ||||||||||| ||||    
T  43418199 tgcaatcaaatggttgaaatcaaatcaaaaatattagacattaaaatactaacggagatgacc 43418137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 2292324 - 2292253
Alignment:
Q  179 aatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||| ||||||||||  |||||| |||| ||||||||||  |||| ||||||||||||||| ||||||||||    
T  2292324 aatagacatgcaatctgatggttgaaattatatcaaaaatattagtcattaaaaaactaacagagaggacca 2292253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 36244711 - 36244770
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| || ||| ||||||||||| | |||| ||||||||||||||||||||    
T  36244711 acatgcaatcaaacggctaatatcatatcaaacattttaaacattaaaaaactaacggag 36244770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 43895555 - 43895630
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||  ||||||||  |||||||||||| | ||||||||  ||||||||||||||| ||||||||| |||||    
T  43895555 atacaatagtcatgcaattgaatggttaaaattacatcaaaaatattagacattaaaaaattaacggagatgacca 43895630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 56157107 - 56157048
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||||||| |||| || ||| ||||||||||||| |||| ||||||||||||||||||||    
T  56157107 acatgcaaccaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacggag 56157048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 56086462 - 56086530
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaat 219  Q
    ||||||| |||||||||||| | |||||||||  |||| ||||| |||||||||||||| ||||||||||    
T  56086462 ttaggtgatgacgattcactat-agatacaatggacattcaatcgaatggttaaaatcaaatcaaaaaat 56086530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 1521129 - 1521184
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacg 240  Q
    |||| |||||||||||||||||| | || |||||||||||||||||||||| |||||    
T  1521129 acatacaatcaaatggttaaaataaaat-aaaaaatttagacattaaaaaattaacg 1521184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 8363333 - 8363392
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |   || ||||||||||||| |||| ||||||||||||||||||||    
T  8363333 acatgcaatcaaacgacgaatatcatatcaaaaattttaaacattaaaaaactaacggag 8363392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 39591107 - 39591046
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||||||||| ||||| |||||||| |||||  |||||||| ||||||||||| | ||||||    
T  39591107 tgcaatcaaacggttataatcatattaaaaatattagacataaaaaaactaactgcgaggac 39591046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 56297668 - 56297697
Alignment:
Q  226 attaaaaaactaacggagaggaccacatta 255  Q
    ||||||||||||||||||||||||||||||    
T  56297668 attaaaaaactaacggagaggaccacatta 56297697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 4872142 - 4872209
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaa 218  Q
    ||||||||||||| |||||| |||||||||||  |||| | ||| |||||||||||| | |||||||||    
T  4872142 ttaggtgctgacggttcact-ttagatacaatggacattcgatcgaatggttaaaatgaaatcaaaaaa 4872209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 38187 - 38086
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||||| |||||||||| |||||||  ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38187 ttaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaatcatatcaaaaaatttagacatta-aaaactaacggagaggacc 38089  T
Q  250 aca 252  Q
    |||    
T  38088 aca 38086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 39516410 - 39516515
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||| |||||||| |||||| |||||||||||  ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |    
T  39516410 ttagatgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaatcacatgaaaaaatttagacattaaaaaactaacggagaggatc 39516509  T
Q  250 acatta 255  Q
    ||||||    
T  39516510 acatta 39516515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7770179 - 7770094
Alignment:
Q  171 ttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacattaa 256  Q
    |||||||||||  |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  7770179 ttagatacaatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggaccatattaa 7770094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7777856 - 7777771
Alignment:
Q  171 ttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacattaa 256  Q
    |||||||||||  |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  7777856 ttagatacaatggacatacaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggaccatattaa 7777771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 22621047 - 22621154
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||| | ||||| |||| |||||||  ||||||||||||||| ||||||||||||||| || |||| |||||||||||||||| |||||||||    
T  22621047 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatgattaaaatcatatcaagaattttatacattaaaaaactaacagagaggacc 22621146  T
Q  250 acattaat 257  Q
    ||||||||    
T  22621147 acattaat 22621154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 24191582 - 24191490
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |||||| | |||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  24191582 ttaggtgctgacggttcactat-agatacaatggacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaacggag 24191490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 43203190 - 43203290
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||||   |||||| ||| |||||||  ||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |||||    
T  43203190 ttaggtgctgatagttcacttttaaatacaatggacatgcaatcaaatgtttaaaattaaatcaaaaaatttagacattaaaaaactaacggaggggacc 43203289  T
Q  250 a 250  Q
    |    
T  43203290 a 43203290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 36757167 - 36757230
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagagga 247  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36757167 acatgcaattaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaatggagagga 36757230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7795949 - 7795863
Alignment:
Q  171 ttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaa-tttagacattaaaaaactaacggagaggaccacattaa 256  Q
    |||||||||||  |||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||    
T  7795949 ttagatacaatggacatacaatcaaatggttaaaatcacataaaaaaaatttagacattaaaaaactaacggagaggaccatattaa 7795863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 16362607 - 16362522
Alignment:
Q  165 tcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||| ||||||| ||| ||||||| || |||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  16362607 tcactgttatatacaatgtacctgcaatcgaacggttgaaatcatatcaaaaatattagacattaaaaaactaacggagaggacca 16362522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 7815226 - 7815140
Alignment:
Q  171 ttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaa-tttagacattaaaaaactaacggagaggaccacattaa 256  Q
    |||||||||||  ||||  ||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||||    
T  7815226 ttagatacaatggacatagaatcaaatggttaaaatcacataaaaaaaatttagacattaaaaaactaacggagaggaccatattaa 7815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 31844574 - 31844474
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||| | ||||||||||  ||||||| |||||||||||| |||||||||||| |||||||| |||||| ||||||  || ||||||| |||||    
T  31844574 ttaggtgctgatggttcactgttaattacaatagacatgcaatcaagtggttaaaatcaaatcaaaaattttagaaattaaaggacaaacggaggggacc 31844475  T
Q  250 a 250  Q
    |    
T  31844474 a 31844474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 9853737 - 9853680
Alignment:
Q  186 atgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  9853737 atgcaatcaaacggttaaaattatatcaaaaaatttagatattaaaaaactaacggag 9853680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 13514803 - 13514878
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| ||||||| |||| ||||||||||  |||| |||||||||||||||||||| |||||    
T  13514803 atacaatagacatgcaatcgaatggtttaaattatatcaaaaacattagtcattaaaaaactaacggagatgacca 13514878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 13604336 - 13604411
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| ||||||| |||| ||||||||||  |||| |||||||||||||||||||| |||||    
T  13604336 atacaatagacatgcaatcgaatggtttaaattatatcaaaaacattagtcattaaaaaactaacggagatgacca 13604411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 39323965 - 39323890
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| |||||||||||| ||||||||||  |||||  || |||||||||||||||||||||    
T  39323965 atacaatagacatgcaatctaatggttaaaattatatcaaaaatattagatcttgaaaaactaacggagaggacca 39323890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 37275056 - 37274990
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| ||||||| ||||||||||| |||  ||| |||||||||||||||||||||||||||    
T  37275056 acatgcaatcgaatggttgaaatcatatcagaaatgttatacattaaaaaactaacggagaggacca 37274990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 42793871 - 42793806
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||| |||| ||| |||||    
T  42793871 acatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacagaggggacc 42793806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 24306043 - 24306126
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgg 241  Q
    |||||||||||| ||| |||||||  | || |||| ||||||||||||| | ||||||| |||||| |||||||||||||||||    
T  24306043 tgacgattcactattaaatacaatggagatccaattaaatggttaaaattaaatcaaaatatttaggcattaaaaaactaacgg 24306126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 24068467 - 24068428
Alignment:
Q  216 aaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  24068467 aaatttagacattaaaaaactaacggagaggaccaaatta 24068428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 45395953 - 45396028
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||  ||||||||||||| |||||||||| ||| |||||  | ||||||||| |||||||||||| ||||||    
T  45395953 atacaatggacatgcaatcaaacggttaaaatcgtataaaaaatatcagacattaagaaactaacggagtggacca 45396028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 24068521 - 24068472
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatgg 199  Q
    ||||||||||||| |||||| |||||||||||  ||||||||||||||||    
T  24068521 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatgg 24068472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 34616326 - 34616245
Alignment:
Q  161 cgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    |||| ||| |||| ||| |||| || ||||||| ||||||| ||||||||| |||||  ||| |||||||||||||||||||    
T  34616326 cgatccaccgttaaatataatagacctgcaatcgaatggttgaaatcatattaaaaatattaaacattaaaaaactaacgga 34616245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 40251296 - 40251369
Alignment:
Q  177 acaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||| || ||||||  ||||||| |||||||||||||||  ||||||||||||||| |||  ||||||||||    
T  40251296 acaatagacctgcaattgaatggttgaaatcatatcaaaaatattagacattaaaaaattaattgagaggacca 40251369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 44102125 - 44102052
Alignment:
Q  177 acaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||| |||||||||| ||||||| | || |||| |||||  |||| ||||||||||||||| ||||||||||    
T  44102125 acaatagacatgcaatccaatggttgagattatataaaaaatattagtcattaaaaaactaacagagaggacca 44102052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 8397208 - 8397271
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||||||||| |||| ||||||||||  |||  ||||| |||||||||||||| |||||    
T  8397208 tgcaatcaaatggttgaaattatatcaaaaatattaatcattataaaactaacggagatgacca 8397271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 38697322 - 38697263
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||| |||||||||| |||||||||||  |||||||||||||| | |||||||| |||||    
T  38697322 aatctaatggttaaattcatatcaaaagttttagacattaaaatagtaacggaggggacc 38697263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 44607246 - 44607329
Alignment:
Q  167 actgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| |||||||  || ||||||  || ||| | |||||||| |||||  |||||||||||||||||||| ||||||||||    
T  44607246 actgttatatacaatggacctgcaattcaacggtcataatcatattaaaaatattagacattaaaaaactaactgagaggacca 44607329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 2075562 - 2075480
Alignment:
Q  166 cactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||| |||||||||||  || ||||||||| |||||||||||| |||| | |  ||| ||||||||||| |||||| ||||||    
T  2075562 cactattagatacaatgaacctgcaatcaagtggttaaaatcacatcatacatattatacattaaaaaattaacggtgaggac 2075480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 21671287 - 21671327
Alignment:
Q  177 acaatatacatgcaatcaaatggttaaaatcatatcaaaaa 217  Q
    |||||| |||||||||||||||||| |||| ||||||||||    
T  21671287 acaatagacatgcaatcaaatggttgaaattatatcaaaaa 21671327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 28326303 - 28326405
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| |||| |||||| ||| ||| |||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28326303 ttaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatattaaaaaatttagacattaaaaaactaacggagaggacc 28326402  T
Q  250 aca 252  Q
    |||    
T  28326403 aca 28326405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 17288155 - 17288248
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |||||| ||| |||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17288155 ttaggtgctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 17288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 45721679 - 45721784
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||| |||||| |||| | |||||||||||  ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |    
T  45721679 ttaggtactgacggttcattattagatacaatgaacatgcaatcaaatggttaaaatcacataaaaaaatttagacattaaaaaactaacggagaggatc 45721778  T
Q  250 acatta 255  Q
    ||||||    
T  45721779 acatta 45721784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 43442673 - 43442773
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||||||||| |||||||||| ||||||   |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  43442673 ttaggtgctgacggttcactgttaaatacaacggacatgcaatcaaattgttaaaatcaaatcaaaaaatttagacattaaaagactaacggaggggacc 43442772  T
Q  250 a 250  Q
    |    
T  43442773 a 43442773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 41515199 - 41515097
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| |||| |||||| ||| ||| |||  |||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||    
T  41515199 ttaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaatcatataaaaaactttagacattaaaaaattaacggagagaacc 41515100  T
Q  250 aca 252  Q
    |||    
T  41515099 aca 41515097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 35296762 - 35296822
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  35296762 acatgcaatcaaacggttaaaatcatatcaaaaaatttagacattaaaaaattaacggaga 35296822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 666927 - 666832
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||| |||||||  | ||| |||| ||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||    
T  666927 gtgctgacggttcactggaa-atataatagacatgcaattaaatggttaaaatcaaatcaaaaaatttcgacattaaaatactaacggaggggacca 666832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 3330893 - 3330810
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 238  Q
    ||||||||| |||||| | |||||||||  ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  3330893 gtgctgacggttcactat-agatacaatgaacatgcaatcaaacggttaaaatcaaatcaaaaaatttagacattaacaaactaa 3330810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 32653668 - 32653577
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||||||||  |||||||| || || |||  ||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  32653668 ttaggtgctgacagttcactgt-aggtataatggacatgcaatcaaacggttaaaatgatatcaaaaattttagtcattaaaaaactaacgga 32653577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 10956012 - 10955953
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  10956012 caatcaaatggttaaaatcaaatcaaaaattttagacattaaaaatctaacggaggggac 10955953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 44376646 - 44376691
Alignment:
Q  198 ggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  44376646 ggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggag 44376691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 44385513 - 44385558
Alignment:
Q  198 ggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  44385513 ggttaaaatcaaatcaaaaaatttagacattaaaaaactaacggag 44385558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 26146651 - 26146710
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||   ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  26146651 acatgcaatcgggtggttaaaatcatatcaaaaagtttagacattaaaaaaataacggag 26146710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 41329414 - 41329473
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |||||| |||| ||||||||||||| |||||||||| |||||||||    
T  41329414 acatgcaatcaaacggttaatatcacatcaaaaaatttaaacattaaaaatctaacggag 41329473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 13446605 - 13446671
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| ||||||| ||||||||| | |||  ||| |||||||||||||||||||||||||||    
T  13446605 acatgcaatcgaatggttgaaatcatatgagaaatgttacacattaaaaaactaacggagaggacca 13446671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 29589220 - 29589269
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  29589220 aatcaaatggttaaaatcaaatcaaaaattttaaacattaaaaaactaac 29589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 14107998 - 14107935
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| ||||| ||| |||| |||||  |||||||| ||||||||||||||||||||||    
T  14107998 tgcaatcaaacggttataattatattaaaaatattagacatcaaaaaactaacggagaggacca 14107935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 14417955 - 14417892
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| ||||| ||| |||| |||||  |||||||| ||||||||||||||||||||||    
T  14417955 tgcaatcaaacggttataattatattaaaaatattagacatcaaaaaactaacggagaggacca 14417892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 43931816 - 43931879
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| |||| || ||||||| |||||||  |||||||||||||||||||||||| ||||||    
T  43931816 tgcaatcgaatgattcaaatcatttcaaaaatgttagacattaaaaaactaacggaggggacca 43931879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 35483740 - 35483678
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||| |||| |||||| ||||||||  ||||||||| ||| ||||||||||||||||    
T  35483740 tgcaatcaaacggttgaaatcaaatcaaaaatattagacatttaaatactaacggagaggacc 35483678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 45089640 - 45089582
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||| |||||||    
T  45089640 acatgtaatcaaatgattaaaatcacatctaaaaatttagatattaaaaaattaacgga 45089582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 25532310 - 25532257
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacg 240  Q
    ||||||| ||||||| |||||||||||||||  ||| |||||||||||||||||    
T  25532310 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacg 25532257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 40926472 - 40926532
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||| |||||||| |||||  ||||||||||||||  |||||||||||||||    
T  40926472 aatcaaacggttataatcatattaaaaatattagacattaaaaagttaacggagaggacca 40926532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 44114609 - 44114669
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||| |||||||| |||||  | | |||||||||||||||||||||||||||    
T  44114609 aatcaaacggttataatcatattaaaaatatgatacattaaaaaactaacggagaggacca 44114669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 18670454 - 18670517
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| || || |||||||| |||||  ||| |||||||||||||||| ||||||||||    
T  18670454 tgcaatcaaacggctataatcatattaaaaatattatacattaaaaaactaacagagaggacca 18670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 40110565 - 40110672
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||| | ||||| |||| |||||||  ||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |||||||||    
T  40110565 ttaggtggtgaaggttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaataattttatacattaaaaaactaacagagaggacc 40110664  T
Q  250 acattaat 257  Q
    ||||||||    
T  40110665 acattaat 40110672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 255
Target Start/End: Original strand, 26803129 - 26803234
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||| | |||||||||| |||||||  ||||||||||||||||||||||||||||||| || |||| ||||||||| |||||| ||||||| |    
T  26803129 ttaggtggtgaaggttcactgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaatactaacagagaggatc 26803228  T
Q  250 acatta 255  Q
    ||||||    
T  26803229 acatta 26803234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 12667190 - 12667285
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||| |||||||  | |||||||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  12667190 gtgctgacggttcactggaa-atacaatagacatgcaatcaaatgattaaaatcaaatcaaaaaatttcgacattaaaaaactaacggaggggacca 12667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 24516523 - 24516430
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacattaat 257  Q
    ||||| |||| |||||||  ||||||||||||||||||||||||||||||| || |||| |||||||||||||||| | | |||||||||||||    
T  24516523 ttcaccgttaaatacaatggacatgcaatcaaatggttaaaatcatatcaagaattttatacattaaaaaactaacaggggggaccacattaat 24516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 40533514 - 40533613
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| |||| |||||| |||  ||||||  |||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  40533514 ttaggtgccgacggttcactattaattacaatggacatgcaatccaatggttaaaatcatatcaaaagttttagacattaaaaaattaacggaggggacc 40533613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 50679773 - 50679839
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50679773 caatcaaacggttgaaaacatatcaaaaaatttagacattaaaaaactaacggagaggaccatatta 50679839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 51446787 - 51446846
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  51446787 acatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaacggag 51446846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 51217794 - 51217721
Alignment:
Q  177 acaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||| |||||||||| ||||||| |||| ||||||||||  |||| ||||||||||||||||||||||||||    
T  51217794 acaatagacatgcaatctaatggttgaaattatatcaaaaatattagtcattaaaaaactaacggagaggacca 51217721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 33941483 - 33941420
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| |||||||||||||| |||||  |||||||||||||||||||| ||||||||||    
T  33941483 tgcaatcaaacggttaaaatcatattaaaaatgttagacattaaaaaactaacagagaggacca 33941420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 48528806 - 48528899
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggtt-aaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||| ||||| |||||| ||| |||||||  |||||||||| ||||||| ||||||| |||||||  |||||| |||||||||||||||||    
T  48528806 ttaggtgttgacggttcactattaaatacaatggacatgcaatctaatggtttaaaatcaaatcaaaagttttagatattaaaaaactaacgga 48528899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 6048123 - 6048040
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaa 233  Q
    ||||||| ||| | |||||| |||||||||||  || | |||||||||||||| ||||| |||||||||||||| |||||||||    
T  6048123 ttaggtgttgatggttcactattagatacaatggacctccaatcaaatggttagaatcaaatcaaaaaatttaggcattaaaaa 6048040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 26287720 - 26287778
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  26287720 acatacaatcaaatggttaaaatcaaat-aaaaaatttagacattaaaaaattaacggag 26287778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 9417050 - 9417108
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    ||||||| ||||| |||||||| |||||  ||| |||||||||||||||||||||||||    
T  9417050 aatcaaacggttataatcatattaaaaatattatacattaaaaaactaacggagaggac 9417108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 5611933 - 5611849
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||| |||||||| | ||||| |  |||| |||||||||||||||||||| ||| || |||||||||||| ||||| ||||||||    
T  5611933 tgacggttcactgtaaaatacattggacatacaatcaaatggttaaaatcaaatc-aagaatttagacattgaaaaattaacggag 5611849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 52076722 - 52076637
Alignment:
Q  165 tcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||  ||||  ||  ||| | ||||||| |||||||| ||||||||    
T  52076722 tcactattagaaacaatagacatgcaatcaaatggttaaaatcgcatcatgaatattaaaaattaaaagactaacggtgaggacca 52076637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 14429943 - 14429863
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggaga 244  Q
    ||||||||||||||  ||| ||   |||||||| ||||||||||||||||| ||  ||||||||||||||| |||| ||||    
T  14429943 ttcactgttagatatcatagacccacaatcaaacggttaaaatcatatcaagaatattagacattaaaaaaataacagaga 14429863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 14479459 - 14479518
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| || ||| || |||||||||| ||||  |||||||||||||||||||    
T  14479459 acatgcaatcaaacggctaatataatatcaaaaattttaatcattaaaaaactaacggag 14479518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 34654290 - 34654353
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| ||||||||| |||||  |||| |||| ||||| |||||||||||||||    
T  34654290 tgcaatcgaatggttgaaatcatattaaaaatattagtcatttaaaaattaacggagaggacca 34654353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 14765045 - 14765106
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||||| |||| ||||||||||||||||  || ||||| ||| ||||||||||||||||    
T  14765045 tgcaatcaaaaggttgaaatcatatcaaaaaacctaaacatt-aaatactaacggagaggacc 14765106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 28051552 - 28051610
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    |||||||||||||  | ||| ||||||||||||| |||| ||||||||||| |||||||    
T  28051552 acatgcaatcaaacagctaatatcatatcaaaaattttaaacattaaaaaattaacgga 28051610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 9210073 - 9210134
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||||||||| |||| ||||||| ||  | |||||||||||||||||||| || |||||    
T  9210073 caatcaaatggttgaaattatatcaagaatataagacattaaaaaactaacggcgatgacca 9210134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 32459551 - 32459596
Alignment:
Q  194 aaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||||||||| |||||| |||  ||||||||||||||||||||    
T  32459551 aaatggttaaaataatatcataaatattagacattaaaaaactaac 32459596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 49292656 - 49292595
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    ||||||||||||||| ||| |||||||| ||  ||||||| ||||| |||||||||| ||||    
T  49292656 tgcaatcaaatggttgaaaccatatcaagaatattagacactaaaagactaacggagtggac 49292595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 8188147 - 8188214
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccac 251  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  8188147 acatgcaatcaaatggttaaaatcatatcagaaattttagacattaaaaaactaacggagaggaccac 8188214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 224511 - 224608
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    ||||| |||||| ||| |||||||  || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  224511 tgacggttcactattaaatacaatgaacgtgcgatcaaatggttaaagtcatatcaaaaaatttagacattaaaaaactaacggagatgactacatta 224608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 5975925 - 5975857
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccaca 252  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  5975925 acatgcaatcaaatggttaaaatcatatcaaaaactttagacattaaaaaactaacagagagaaccaca 5975857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 10736856 - 10736948
Alignment:
Q  158 tgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||| |||||| |||||||||||  |||| |||||||||||||||||||| |||||||| |||||||||||||||  |||||||| ||||||    
T  10736856 tgacggttcactattagatacaatggacattcaatcaaatggttaaaatcaaatcaaaaattttagacattaaaaagttaacggaggggacca 10736948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 9219368 - 9219289
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||||| ||| |||||||  ||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||    
T  9219368 ttcactattaaatacaatgaacatgcaatcaaacggttaaaatcaaataaaaaattttagacattaaaaaactaacggag 9219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 13519649 - 13519595
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 238  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  13519649 acatgcaatcaaatggttaaaatcatatcaaaagttttagacattaaaaaactaa 13519595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 18695597 - 18695665
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    |||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||    
T  18695597 tgcaatcaaacggttgaaaacatatcaaaaattttagacattaaaaaactaacggagatgaccatatta 18695665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 21389095 - 21389161
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatta 255  Q
    |||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  21389095 caatcaaacggttgaaaacatataaaaaattttagacattaaaaaactaacggagaggaccatatta 21389161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 1273255 - 1273192
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||||||||||||||  ||| |||||||||||||||||||| ||||||    
T  1273255 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaactaacggaggggacca 1273192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 5384298 - 5384359
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||| ||||||| |||| ||||||||||  ||| |||||||||||||||||||||||||||    
T  5384298 caatcgaatggttgaaattatatcaaaaatattaaacattaaaaaactaacggagaggacca 5384359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 4124961 - 4124857
Alignment:
Q  152 aggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccac 251  Q
    ||||||||||| |||||| ||| |||||||  | || |||||||||||||||||| | |||||||  |||| |||||||| |||||| | || ||||||     
T  4124961 aggtgctgacggttcactattaaatacaatggatatacaatcaaatggttaaaattaaatcaaaatttttaaacattaaacaactaatgaaggggaccaa 4124862  T
Q  252 attaa 256  Q
    |||||    
T  4124861 attaa 4124857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 19827090 - 19827145
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||||||||||  |||  |||||||||||||||||||||||||||| ||||||    
T  19827090 tgcaatcaaatggtcgaaacaatatcaaaaaatttagacattaaaaaacaaacgga 19827145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 10978224 - 10978282
Alignment:
Q  185 catgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||| |||||||||||| ||||||||||  ||| |||||||||| |||||||||    
T  10978224 catgcaatcgaatggttaaaattatatcaaaaatattaaacattaaaaatctaacggag 10978282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 35047590 - 35047536
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaa 238  Q
    |||||||||| |||| ||||||| |||||||||||||||  ||||||||||||||    
T  35047590 acatgcaatcgaatgattaaaattatatcaaaaaatttaagcattaaaaaactaa 35047536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 41905338 - 41905281
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagagga 247  Q
    ||||||||||||| |||||||| |||||  | | ||||||||||||||||||||||||    
T  41905338 aatcaaatggttataatcatattaaaaatatgatacattaaaaaactaacggagagga 41905281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 22812336 - 22812400
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacatt-aaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||||||||||||||  ||| ||||| ||||||||||||||| ||||||    
T  22812336 tgcaatcgaatggttgaaatcatatcaaaaatattaaacattaaaaaaactaacggaggggacca 22812400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 15857576 - 15857631
Alignment:
Q  195 aatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||  ||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  15857576 aatggttggaatcatatcaaaaatattaaacattaaaaaactaacggagatgacca 15857631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 11796740 - 11796682
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||||||||| || ||| ||||||||||||  |||| |||||||||||||| ||||    
T  11796740 acatgcaatcaaacggctaatatcatatcaaaagttttaaacattaaaaaactagcgga 11796682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 1103878 - 1103978
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||||| || ||| ||| |||||||   |||| |||| |||||||||||||| |||||    |||||| |||| ||||||||||||| |||||    
T  1103878 ttaggtgttgacggttaactattaaatacaatgggcatgtaatctaatggttaaaatcaaatcaatttttttagatattataaaactaacggaggggacc 1103977  T
Q  250 a 250  Q
    |    
T  1103978 a 1103978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 11884 - 11809
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||||    
T  11884 atacaataaacatgcaatcgaatggttaaaatcacatcaaaaatattagacattaaaaaactaacggagaggacca 11809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 175 - 250
Target Start/End: Complemental strand, 18773832 - 18773757
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| |||||||||||||||||||||||  | |||||||||||||||||| ||||||||||    
T  18773832 atacaatagacatgcaatcgaatggttaaaatcatatcaaaaacatcagacattaaaaaactaacagagaggacca 18773757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 18242220 - 18242318
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    ||||||| ||| | |||||| | | |||||||  ||||||||||||||||||||||| | || ||||| || |||||||||||||||||||||| ||||    
T  18242220 ttaggtgatgatggttcactataaaatacaatggacatgcaatcaaatggttaaaattaaattaaaaatttaagacattaaaaaactaacggaggggac 18242318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 138150 - 138209
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||  ||||||||||| | |||||||| |||||||||||||||| ||||||||    
T  138150 acatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggag 138209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 146171 - 146230
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||  ||||||||||| | |||||||| |||||||||||||||| ||||||||    
T  146171 acatgcaatcggatggttaaaattacatcaaaaagtttagacattaaaaaaataacggag 146230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 11968406 - 11968453
Alignment:
Q  179 aatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagaca 226  Q
    |||| ||||||||||||||||||||||||| |||||||| ||||||||    
T  11968406 aatagacatgcaatcaaatggttaaaatcaaatcaaaaattttagaca 11968453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 13279520 - 13279461
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    |||||||| |||| ||||||||| |||||||| |||||||||||||||||| |||| ||||    
T  13279520 caatcaaacggttgaaatcatataaaaaaatt-agacattaaaaaactaacagagatgacc 13279461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 33807852 - 33807792
Alignment:
Q  190 aatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||| |||||||| |||||  | ||||||||||||| |||||||||||||||    
T  33807852 aatcaaacggttataatcatatgaaaaatatcagacattaaaaaattaacggagaggacca 33807792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 30232850 - 30232905
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||||||  ||||||||||| |||| ||||| |||||||||||||||| ||||    
T  30232850 acatgcaatcggatggttaaaattatataaaaaagtttagacattaaaaaaataac 30232905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 6497 - 6583
Alignment:
Q  171 ttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaa-aatttagacattaaaaaactaacggagaggaccacattaa 256  Q
    |||||||||||  ||||  ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||| |||||    
T  6497 ttagatacaatggacatagaatcaaatggttaaaatcacataaaaaaaatttagacattaaaaaactaacggagaggaccatattaa 6583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 7100 - 7007
Alignment:
Q  150 ttaggtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||| ||||| |||||| ||| ||| |||  ||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  7100 ttaggtgttgacggttcactattaaatataatggacatgcaatcaaacggttaaaattatatcaaaaaatttagatattgaaaaactaacggag 7007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 24753 - 24828
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||  |||||||||||||| || |||||  ||||||||||||||||||||||||| |||||    
T  24753 atacaatagacatgcaattgaatggttaaaatcacataaaaaatattagacattaaaaaactaacggagatgacca 24828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 54757 - 54690
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggaccacatt 254  Q
    |||||||||| ||||| |||||||| |||||  |||||||| ||||||||||||||||||||||||||    
T  54757 tgcaatcaaacggttataatcatattaaaaatattagacatcaaaaaactaacggagaggaccacatt 54690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 1147921 - 1147862
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  1147921 acatgcaatcggatggttaaaatcatatcaaaaagtttagacattaaaaaaataacggag 1147862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 4919999 - 4919940
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||||||| ||||    
T  4919999 acatgcaatcaaacggttaaaatcatatcaaaaaatttagatgttaaaaaactaatggag 4919940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 45699701 - 45699642
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||||| ||||    
T  45699701 acatgcaatcaaacagttaaaatcatatcaaaaaatttagatattaaaaaactaatggag 45699642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 4830627 - 4830686
Alignment:
Q  189 caatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggac 248  Q
    ||||| ||||||| |||||||||||||||  ||||||||| |||||||||||||||||||    
T  4830627 caatcgaatggttgaaatcatatcaaaaatattagacattcaaaaactaacggagaggac 4830686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 26205985 - 26206060
Alignment:
Q  175 atacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| |||||||||| ||||||| |||| ||||  ||||  |||| ||||||||||||||||||||||||||    
T  26205985 atacaatagacatgcaatcgaatggttgaaattatatataaaatattagtcattaaaaaactaacggagaggacca 26206060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 19397702 - 19397644
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    |||||||||| |||||||||||| |||||||||  |||||||||||||||| |||||||    
T  19397702 acatgcaatccaatggttaaaattatatcaaaagttttagacattaaaaaaataacgga 19397644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 28610194 - 28610136
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    ||||||||||||| || ||| ||||||||||||| |||| |||||||||||||||||||    
T  28610194 acatgcaatcaaacggctaatatcatatcaaaaattttaaacattaaaaaactaacgga 28610136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 3533576 - 3533631
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacgga 242  Q
    |||||||||| |||| |||||||||||||||| ||| ||||||||| |||||||||    
T  3533576 tgcaatcaaacggttgaaatcatatcaaaaaacttaaacattaaaatactaacgga 3533631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42672061 - 42672100
Alignment:
Q  1 taattacccttttccatcaacactaattggttaattaatt 40  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  42672061 taattacccttttccatcaacacaaattggttaattaatt 42672100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 25569968 - 25569883
Alignment:
Q  154 gtgctgacgattcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaac 239  Q
    ||||||| | |||||| ||| |||| ||| |||||||||||| |||||||||| ||||||| ||   || ||||||||||||||||    
T  25569968 gtgctgatggttcactcttaaatactatagacatgcaatcaagtggttaaaatgatatcaagaataatatacattaaaaaactaac 25569883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 4513693 - 4513761
Alignment:
Q  177 acaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagag 245  Q
    |||||| |||||||||||||||||| |||| ||||||||||  |||   | ||||||||||||||||||    
T  4513693 acaatagacatgcaatcaaatggttgaaattatatcaaaaatattatttaataaaaaactaacggagag 4513761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 40174694 - 40174777
Alignment:
Q  166 cactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| ||| |||  || ||||||| ||||||| ||||||||| |||||  ||| ||||||||||||||||||||| |||||    
T  40174694 cactgttaaatataatggacctgcaatcgaatggttgaaatcatataaaaaatatta-acattaaaaaactaacggagatgacca 40174777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 6707092 - 6707029
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||| |||||| |||  || ||||||||||||||||||||| ||||||    
T  6707092 tgcaatctaatggttgaaattatatcataaatatttgacattaaaaaactaacggaggggacca 6707029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 16289949 - 16289890
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    |||||| ||||||||  |||||||| || ||||| |||||||||||||||||||| ||||    
T  16289949 acatgcgatcaaatgagtaaaatcaaataaaaaattttagacattaaaaaactaatggag 16289890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 23178832 - 23178895
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||| |||||| |||  ||| ||||||||||||||||||||| |||||    
T  23178832 tgcaatcgaatggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgacca 23178895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 23590089 - 23590152
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    ||||||| ||||||| |||| |||||| |||  ||| ||||||||||||||||||||| |||||    
T  23590089 tgcaatcgaatggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgacca 23590152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 2717728 - 2717789
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaa-ctaacggagagga 247  Q
    |||||||||||||||||||||| |||| |||  ||| ||||||||||| ||||||| |||||    
T  2717728 tgcaatcaaatggttaaaatcagatcagaaatattaaacattaaaaaagctaacggtgagga 2717789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 42296 - 42359
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||||| |||| ||||||||||||||||| || ||||||||| |||||| ||||||||||    
T  42296 tgcaatcaaacggttgaaatcatatcaaaaaatataaacattaaaatactaacagagaggacca 42359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 38712 - 38653
Alignment:
Q  184 acatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggag 243  Q
    ||||||||||||| || ||| ||||||| ||||| ||||  |||||||||||||||||||    
T  38712 acatgcaatcaaacggctaatatcatataaaaaattttaatcattaaaaaactaacggag 38653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 8545 - 8483
Alignment:
Q  187 tgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacc 249  Q
    ||||||| ||||||| |||| |||||| |||  ||| ||||||||||||||||||||| ||||    
T  8545 tgcaatcgaatggttgaaattatatcagaaatgttacacattaaaaaactaacggagatgacc 8483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 72913 - 72999
Alignment:
Q  164 ttcactgttagatacaatatacatgcaatcaaatggttaaaatcatatcaaaaaatttagacattaaaaaactaacggagaggacca 250  Q
    |||||||| | |||| ||| || |||||||||| ||||| |||||||| |||||  ||| |  | ||||||||||||||||||||||    
T  72913 ttcactgtaatatactatagacctgcaatcaaacggttataatcatattaaaaatattataattaaaaaaactaacggagaggacca 72999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University