View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11484_high_11 (Length: 263)

Name: NF11484_high_11
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11484_high_11
NF11484_high_11
[»] chr2 (25 HSPs)
chr2 (32-205)||(8912910-8913078)
chr2 (32-156)||(43850067-43850191)
chr2 (36-173)||(30733989-30734126)
chr2 (36-156)||(30732026-30732146)
chr2 (36-156)||(32918098-32918218)
chr2 (58-156)||(2841008-2841106)
chr2 (32-156)||(9026804-9026929)
chr2 (32-156)||(8973330-8973455)
chr2 (32-156)||(9020865-9020990)
chr2 (32-172)||(9016495-9016639)
chr2 (32-156)||(9008039-9008164)
chr2 (67-173)||(6471709-6471814)
chr2 (32-173)||(19232365-19232505)
chr2 (56-156)||(9030416-9030516)
chr2 (55-143)||(17275862-17275950)
chr2 (58-170)||(35701893-35702005)
chr2 (204-247)||(8912573-8912616)
chr2 (61-156)||(8992166-8992262)
chr2 (38-156)||(8984711-8984830)
chr2 (57-108)||(17225653-17225704)
chr2 (67-156)||(10763878-10763967)
chr2 (112-156)||(8979340-8979384)
chr2 (112-156)||(8988473-8988517)
chr2 (101-156)||(9032071-9032126)
chr2 (112-156)||(9023465-9023509)
[»] chr4 (11 HSPs)
chr4 (32-156)||(50077164-50077288)
chr4 (57-156)||(49106519-49106618)
chr4 (32-156)||(3461107-3461231)
chr4 (32-156)||(11652357-11652481)
chr4 (32-156)||(49108598-49108722)
chr4 (56-156)||(26998729-26998829)
chr4 (68-156)||(26984668-26984756)
chr4 (62-152)||(48205853-48205943)
chr4 (57-146)||(21503706-21503795)
chr4 (65-138)||(35806165-35806238)
chr4 (67-108)||(54677592-54677633)
[»] chr1 (20 HSPs)
chr1 (36-156)||(14654309-14654429)
chr1 (36-156)||(14664100-14664220)
chr1 (36-156)||(14674499-14674619)
chr1 (32-156)||(33988088-33988212)
chr1 (36-173)||(14681600-14681737)
chr1 (36-156)||(14679877-14679997)
chr1 (36-156)||(14716309-14716429)
chr1 (37-156)||(38175500-38175619)
chr1 (34-156)||(14708596-14708718)
chr1 (36-156)||(14652543-14652663)
chr1 (36-156)||(14662334-14662454)
chr1 (36-156)||(14669678-14669798)
chr1 (36-156)||(14683768-14683888)
chr1 (36-156)||(14706106-14706226)
chr1 (33-156)||(11872446-11872570)
chr1 (36-156)||(28366167-28366288)
chr1 (57-156)||(14667101-14667200)
chr1 (79-156)||(14676650-14676727)
chr1 (96-156)||(37422187-37422247)
chr1 (33-119)||(7448393-7448479)
[»] chr6 (7 HSPs)
chr6 (34-156)||(10791619-10791741)
chr6 (34-156)||(10795857-10795979)
chr6 (47-156)||(8875707-8875818)
chr6 (32-172)||(30521244-30521384)
chr6 (57-131)||(11333273-11333347)
chr6 (36-119)||(13136609-13136692)
chr6 (68-156)||(21216043-21216131)
[»] chr8 (10 HSPs)
chr8 (32-156)||(40054330-40054454)
chr8 (36-172)||(10944368-10944504)
chr8 (32-156)||(41841117-41841241)
chr8 (57-156)||(44879001-44879100)
chr8 (57-156)||(44880821-44880920)
chr8 (32-173)||(37679756-37679897)
chr8 (38-156)||(42555053-42555172)
chr8 (57-156)||(44582871-44582970)
chr8 (75-156)||(37682075-37682156)
chr8 (37-108)||(42554632-42554703)
[»] chr5 (5 HSPs)
chr5 (56-156)||(7524986-7525086)
chr5 (32-156)||(3643658-3643782)
chr5 (57-156)||(1716441-1716541)
chr5 (56-156)||(4103263-4103363)
chr5 (65-151)||(16037881-16037966)
[»] chr7 (2 HSPs)
chr7 (57-172)||(27134513-27134628)
chr7 (56-156)||(8128161-8128260)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 8913078 - 8912910
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatca--tgtgattcattggaccacatattatatattaaaatgatatgaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  8913078 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgtgattcattggaccacatattatatattaaaatgatatgaa 8912979  T
Q  130 caaatactacacttgatcttagccaaacagtcgaaaaaggtatacttacggtctcatttattgaggctaaaagtta 205  Q
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8912978 -------tacacttgatcttagccaagcagtcgaaaaaggtatacttacggtctcatttattgaggctaaaagtta 8912910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 43850191 - 43850067
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| |||| ||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||| | |||||||| ||||| |||||    
T  43850191 ccaatagcaagctattgaagtgacctctccccctcaaaaaagtgatttaatatcatgtgactcattgggccacatatcagatattaaactgataagaaca 43850092  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  43850091 gatactacacttgatcttagccaaa 43850067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 30734126 - 30733989
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  30734126 tagcaagctactaaaatggcttctccccctaaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 30734027  T
Q  136 ctacacttgatcttagccaaacagtcgaaaaaggtata 173  Q
    |||||||||||||||||||||  | ||| |||||||||    
T  30734026 ctacacttgatcttagccaaaaggccgagaaaggtata 30733989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 30732146 - 30732026
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||  || ||| ||| |||||||||||||||||||||||||| |||||  |||||| |||||||||| |||||||| ||||| ||||| |||    
T  30732146 tagcaagctaccaaagtggcctccccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 30732047  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  30732046 ctacacttgatcttagccaaa 30732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 32918218 - 32918098
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| |||    
T  32918218 tagcaagctactgcaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 32918119  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  32918118 ctacacttgatcttagccaaa 32918098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 2841008 - 2841106
Alignment:
Q  58 ctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  2841008 ctccccctcaaaaaagtaatttaatatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 2841106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 9026929 - 9026804
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaata-tcatgtgattcattggaccacatattatatattaaaatgatatgaac 130  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||| |  |||||  |||||| ||||  || | |||||||| ||||| ||||    
T  9026929 ccaatagcaagctattgaaatggtctctcccactcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactgataagaac 9026830  T
Q  131 aaatactacacttgatcttagccaaa 156  Q
    | ||||||||||||||||||||||||    
T  9026829 agatactacacttgatcttagccaaa 9026804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 8973455 - 8973330
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcat-gtgattcattggaccacatattatatattaaaatgatatgaac 130  Q
    |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||  | ||||  |||||| ||||  || | |||||||| | ||| ||||    
T  8973455 ccaacagcaagctattgaaatggtctctcccccttaaaaaagtaatttaatattgttgtgacccattgggccactaatcagatattaaactaataagaac 8973356  T
Q  131 aaatactacacttgatcttagccaaa 156  Q
    | ||||||||||||||||||||||||    
T  8973355 agatactacacttgatcttagccaaa 8973330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 9020990 - 9020865
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaata-tcatgtgattcattggaccacatattatatattaaaatgatatgaac 130  Q
    ||||||||||| || |||||||| ||||| |||||||||||||||||||||| |   ||||  |||||| |||||| | | |||||||| ||||| ||||    
T  9020990 ccaatagcaagttattgaaatggcctctcaccctcaaaaaagtaatttaatactgtagtgacccattgggccacatctcagatattaaattgataagaac 9020891  T
Q  131 aaatactacacttgatcttagccaaa 156  Q
    | ||||||||||||||||||||||||    
T  9020890 agatactacacttgatcttagccaaa 9020865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 9016639 - 9016495
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaata-tcatgtgattcattggaccacatattatatattaa---aatgatatg 127  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||| |  |||||  |||||| ||||  || | |||||||   | ||||| |    
T  9016639 ccaatagcaagctattgaaattgtctctccccctcaaaaaagtaatttaatactgttgtgacccattgggccactaatcagatattaaactactgataag 9016540  T
Q  128 aacaaatactacacttgatcttagccaaacagtcgaaaaaggtat 172  Q
    |||| |||||||| |||||||||||||||  |||||| |||||||    
T  9016539 aacagatactacatttgatcttagccaaaaggtcgaataaggtat 9016495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 9008164 - 9008039
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaata-tcatgtgattcattggaccacatattatatattaaaatgatatgaac 130  Q
    |||||| |||| || |||||||| |||||||||||||||||||||||||||| |  | |||  |||||| ||||  || | |||||||| ||||| ||||    
T  9008164 ccaataacaagttattgaaatggcctctccccctcaaaaaagtaatttaatactgttatgacccattgggccactaatcagatattaaactgataagaac 9008065  T
Q  131 aaatactacacttgatcttagccaaa 156  Q
    | ||||||||||||||||||||||||    
T  9008064 agatactacacttgatcttagccaaa 9008039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 6471709 - 6471814
Alignment:
Q  67 aaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaacagtcgaaaa 166  Q
    |||||||||| ||||||||||||||| |||| ||||  |||| | |||||||| | ||| ||||| ||||||||||| ||||||||||||  ||||||||    
T  6471709 aaaaaagtaacttaatatcatgtgatccattagaccgtatatcagatattaaactaataagaacatatactacactt-atcttagccaaaaggtcgaaaa 6471807  T
Q  167 aggtata 173  Q
    |||||||    
T  6471808 aggtata 6471814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 19232365 - 19232505
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| |||| |||  ||||||||||||||| ||||||||||||  |||||  || |||  ||||||| |  ||||||| ||||| |||||    
T  19232365 ccaatagcaagctattgaagtggcttctccccctcaaaaaggtaatttaatattgtgtgacccaatgggtcacatatca-gtattaaactgataagaaca 19232463  T
Q  132 aatactacacttgatcttagccaaacagtcgaaaaaggtata 173  Q
     ||| ||||||||||||||||||||  | ||| |||||||||    
T  19232464 gatattacacttgatcttagccaaaaggccgagaaaggtata 19232505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 9030516 - 9030416
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    ||||||||||||||||||||||||||||   |||||  |||||  |||| | | | |||||||| ||||| ||||| |||||||||||||||||||||||    
T  9030516 ctctccccctcaaaaaagtaatttaatactgtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaa 9030417  T
Q  156 a 156  Q
    |    
T  9030416 a 9030416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 17275950 - 17275862
Alignment:
Q  55 tctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacactt 143  Q
    ||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||| | ||| || ||||| ||||  |||||||||||    
T  17275950 tctctccccctcaaaaatgtaattcaatatcgtgtgatccattggaccacatattaaagattgaactgataagaacgtatactacactt 17275862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 35702005 - 35701893
Alignment:
Q  58 ctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaac 157  Q
    |||||||||||||||||||  ||||||| ||||| |  |||| |||||||| | |||||||| | |||  ||||||||| |||||||||||||||||||     
T  35702005 ctccccctcaaaaaagtaaactaatatcgtgtgacttgttggcccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaa 35701906  T
Q  158 agtcgaaaaaggt 170  Q
    ||| || ||||||    
T  35701905 agttgagaaaggt 35701893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 8912616 - 8912573
Alignment:
Q  204 taattgattgcaattttattgatttcatatataaaatagaaaat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8912616 taattgattgcaattttattgatttcatatataaaatagaaaat 8912573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 8992262 - 8992166
Alignment:
Q  61 cccctcaaaaaagtaatttaatatcat-gtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||| || ||||  |||||| ||||  || | ||||| || | ||| ||||| ||||||||||||||||||||||||    
T  8992262 cccctcaaaaaagtaatttaatattattgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaa 8992166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 8984830 - 8984711
Alignment:
Q  38 gcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcat-gtgattcattggaccacatattatatattaaaatgatatgaacaaatac 136  Q
    |||||||| ||||||||  ||| || |||||||||| ||||||| | ||| ||||  |||| | ||||  || | |||||||| | ||| ||||||||||    
T  8984830 gcaagctattgaaatggcatctacctctcaaaaaagcaatttaaaaccattgtgacccattaggccactaatcaaatattaaactaataagaacaaatac 8984731  T
Q  137 tacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||    
T  8984730 tacacttgatcttagccaaa 8984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 17225653 - 17225704
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatat 108  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||| ||||    
T  17225653 tctcctcctcaaaaaagtaatttaatatcgtatgattcattggaccagatat 17225704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 10763878 - 10763967
Alignment:
Q  67 aaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||  | ||   |||||  |||||||| | |||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  10763878 aaaaaagtaatttaatattgtatggaccattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaa 10763967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 8979384 - 8979340
Alignment:
Q  112 atattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  8979384 atattaaactgataagaacagatactacacttgatcttagccaaa 8979340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 8988517 - 8988473
Alignment:
Q  112 atattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||    
T  8988517 atattaaactgataagaacaaatactacacttgatcttcgccaaa 8988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 9032126 - 9032071
Alignment:
Q  101 ccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||| | |||||||| ||||| ||||| |||||||||||||||||| |||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaa 9032071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 9023509 - 9023465
Alignment:
Q  112 atattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||| | ||| ||||| ||||||||||||||||||||||||    
T  9023509 atattaaactaataagaacagatactacacttgatcttagccaaa 9023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 50077164 - 50077288
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||  ||||||| ||||||| | |||||||| ||||| |||||    
T  50077164 ccaatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggaacacatatcagatattaaactgataagaaca 50077263  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  50077264 gatactacacttgatcttagccaaa 50077288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 49106519 - 49106618
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  49106519 tctccccctcaaaaaagtaatttaatatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 49106618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 3461107 - 3461231
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| ||||||||  ||||||||| ||||||||||||||||||| |||||  |||||   ||||||| | |||||||| ||||| |||||    
T  3461107 ccaatagcaagctattgaaatggcttctcccccttaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaaca 3461206  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  3461207 gatactacacttgatcttagccaaa 3461231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 11652357 - 11652481
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| || | |||  |||||||||||||||| |||||||||||| |||||  |||||| |||||||| | |||||||| ||||| |||||    
T  11652357 ccaatagcaagctattggagtggcttctccccctcaaaaaaataatttaatatcgtgtgacccattgggccacatatcagatattaaactgataagaaca 11652456  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  11652457 gatactacacttgatcttagccaaa 11652481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 49108598 - 49108722
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||||||  |||   ||||||||||||||||||||||||||||| |||||  |||||   ||||||| | |||||||| ||||| |||||    
T  49108598 ccaatagcaagctactgtgatgacttctccccctcaaaaaagtaatttaatatcgtgtgacccattgagtcacatatcagatattaaactgataagaaca 49108697  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  49108698 gatactacacttgatcttagccaaa 49108722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 26998729 - 26998829
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    ||||| |||| ||||||||||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||    
T  26998729 ctctctccctaaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 26998828  T
Q  156 a 156  Q
    |    
T  26998829 a 26998829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 26984668 - 26984756
Alignment:
Q  68 aaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  26984668 aaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 26984756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 48205943 - 48205853
Alignment:
Q  62 ccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagc 152  Q
    |||||||||||||||||||||||||||| |  || ||| |||||||| | |||||||| | ||| ||||| ||||||||||| ||||||||    
T  48205943 ccctcaaaaaagtaatttaatatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagc 48205853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 21503795 - 21503706
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgat 146  Q
    |||||||||||||||| |||||||||||| |||||   ||||  |||||||| | |||||||| ||||| ||||| ||||||||||||||    
T  21503795 tctccccctcaaaaaaataatttaatatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 35806238 - 35806165
Alignment:
Q  65 tcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatacta 138  Q
    ||||||||||||||||||||| || || ||||| ||  |||||| |||||||||| ||||| ||||||||||||    
T  35806238 tcaaaaaagtaatttaatatcgtgcgactcattagattacatatcatatattaaactgataagaacaaatacta 35806165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 54677633 - 54677592
Alignment:
Q  67 aaaaaagtaatttaatatcatgtgattcattggaccacatat 108  Q
    ||||||||||||||||||| |||||| |||| ||||||||||    
T  54677633 aaaaaagtaatttaatatcgtgtgatccattagaccacatat 54677592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 14654309 - 14654429
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14654309 tagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14654408  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14654409 ctacacttgatcttagccaaa 14654429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 14664100 - 14664220
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14664100 tagcaagctactgaagtggcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14664199  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14664200 ctacacttgatcttagccaaa 14664220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14674619 - 14674499
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||||||||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14674619 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 14674520  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14674519 ctacacttgatcttagccaaa 14674499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 33988212 - 33988088
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||||||| ||||| ||||||  |||||||| | |||||||| ||||| |||||    
T  33988212 ccaatagcaagctattgaaatggcctctcccccttaaaaaagtaatttaatatcgtgtgactcattgagccacatatcagatattaaactgataagaaca 33988113  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  33988112 gatactacacttgatcttagccaaa 33988088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 14681737 - 14681600
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14681737 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14681638  T
Q  136 ctacacttgatcttagccaaacagtcgaaaaaggtata 173  Q
    |||||||||||||||||||||  | ||| |||||||||    
T  14681637 ctacacttgatcttagccaaaaggccgagaaaggtata 14681600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14679997 - 14679877
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| | ||||  |||||||||||||||||||||||||||||||||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14679997 tagcaagctactaatatggcttctccccctcaaaaaagtaatttaatatcatgtgaaccattggtccacatatcagatattaaactgataagaacagata 14679898  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14679897 ctacacttgatcttagccaaa 14679877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14716429 - 14716309
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| || | | |||||||||||||||||||||||||||||| |||||  |||||| |||||||||| |||||||| ||||| ||||| |||    
T  14716429 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatattagatattaaactgataagaacagata 14716330  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14716329 ctacacttgatcttagccaaa 14716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 38175500 - 38175619
Alignment:
Q  37 agcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatac 136  Q
    |||||||||||||  |||| ||||||||||||||||||||||||||||| |||||  ||||||| ||||||| | |||||||| ||||| ||||| ||||    
T  38175500 agcaagctactgaggtggtttctccccctcaaaaaagtaatttaatatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatac 38175599  T
Q  137 tacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||    
T  38175600 tacacttgatcttagccaaa 38175619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 14708718 - 14708596
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaa 133  Q
    |||||||||||||| || ||  |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |    
T  14708718 aatagcaagctactaaagtgacctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacaga 14708619  T
Q  134 tactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||    
T  14708618 tactacacttgatcttagccaaa 14708596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14652663 - 14652543
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14652663 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 14652564  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14652563 ctacacttgatcttagccaaa 14652543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14662454 - 14662334
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14662454 tagcaagctactaaaatggcttctccccctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaactgataagaacagata 14662355  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14662354 ctacacttgatcttagccaaa 14662334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 14669678 - 14669798
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| || | | |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14669678 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14669777  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14669778 ctacacttgatcttagccaaa 14669798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14683888 - 14683768
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| || | | |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14683888 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14683789  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14683788 ctacacttgatcttagccaaa 14683768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 14706226 - 14706106
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| || | | |||||||||||||||||||||||||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| |||    
T  14706226 tagcaagctactaaagttgcctctccccctcaaaaaagtaatttaatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagata 14706127  T
Q  136 ctacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||    
T  14706126 ctacacttgatcttagccaaa 14706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 11872446 - 11872570
Alignment:
Q  33 caatagcaagctactgaaatggtctctccccctcaaaa-aagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||  ||||||| |||||||||| |||| ||||||||||||||| |||||  ||||| ||||||||| |||||||||| ||||| |||||    
T  11872446 caatagcaagctatcgaaatggcctctcccccttaaaaaaagtaatttaatatcgtgtgacccattgaaccacatatcatatattaaactgataagaaca 11872545  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||| ||||||||||||||| ||||    
T  11872546 gatagtacacttgatcttagtcaaa 11872570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 28366167 - 28366288
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcatt-ggaccacatattatatattaaaatgatatgaacaaat 134  Q
    ||||||||||||  ||| |||||||||||| ||||||||||||||||||| |||||  |||| ||  ||||||| | |||||||| ||||| ||||| ||    
T  28366167 tagcaagctactataatagtctctcccccttaaaaaagtaatttaatatcgtgtgacccattggggtcacatatcagatattaaactgataagaacagat 28366266  T
Q  135 actacacttgatcttagccaaa 156  Q
    ||||||||||||||||||||||    
T  28366267 actacacttgatcttagccaaa 28366288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 14667101 - 14667200
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||  ||||||||||||||||||||||||  |||||| |||| ||| | |||||||| | ||| ||||| ||||||||||||||||||||||||    
T  14667101 tctccccctagaaaaagtaatttaatatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaa 14667200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 14676727 - 14676650
Alignment:
Q  79 taatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    ||||||| |||||  |||||| |||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  14676727 taatatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 14676650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 37422247 - 37422187
Alignment:
Q  96 ttggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    ||||||||||||| | |||||||| ||||| ||||| || |||||||||||||||||||||    
T  37422247 ttggaccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaa 37422187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 7448393 - 7448479
Alignment:
Q  33 caatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaa 119  Q
    ||||||||| ||| ||  ||||| ||| ||| |||||||||||||| |||||| | | ||||||| |||||||||| | ||||||||    
T  7448393 caatagcaaactattgtgatggtttcttcccttcaaaaaagtaattcaatatcgtataattcatttgaccacatatcagatattaaa 7448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 10791619 - 10791741
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaa 133  Q
    |||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||  ||||||| ||||||| | |||||||| ||||| ||||| |    
T  10791619 aatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcatgtgacccattggatcacatatcagatattaaactgataagaacaga 10791718  T
Q  134 tactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||    
T  10791719 tactacacttgatcttagccaaa 10791741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 10795857 - 10795979
Alignment:
Q  34 aatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaa 133  Q
    |||||||||||| |||| |||  ||||||||||||||||||||||||||||| |||||  ||||||  ||||||| | |||||||| ||||| ||||| |    
T  10795857 aatagcaagctattgaagtggcttctccccctcaaaaaagtaatttaatatcgtgtgacccattgggtcacatatcagatattaaactgataagaacaga 10795956  T
Q  134 tactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||    
T  10795957 tactacacttgatcttagccaaa 10795979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 8875818 - 8875707
Alignment:
Q  47 tgaaatggtctctccccctcaaaaaagta--atttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttg 144  Q
    ||||||||| | || ||||||||||||||  |||||||||| ||| ||  |||||||||||||| | |||||||| ||||| ||||| ||| ||||||||    
T  8875818 tgaaatggtttatctccctcaaaaaagtataatttaatatcgtgtaatctattggaccacatatcagatattaaattgataagaacagatattacacttg 8875719  T
Q  145 atcttagccaaa 156  Q
    ||||||||||||    
T  8875718 atcttagccaaa 8875707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 30521384 - 30521244
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    ||||||||||||||  | | ||| |||||||||||||||||  |||| |||||| |||||  |  ||| |||||||| | |||||||| ||||| |||||    
T  30521384 ccaatagcaagctatagtagtggactctccccctcaaaaaataaattgaatatcgtgtgaggcgatggtccacatatcagatattaaactgataagaaca 30521285  T
Q  132 aatactacacttgatcttagccaaacagtcgaaaaaggtat 172  Q
     |||||||||||||||| |||||||  ||||| ||||||||    
T  30521284 gatactacacttgatctcagccaaaaggtcgagaaaggtat 30521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 11333347 - 11333273
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||||||||| | |||||||| ||||| |||||    
T  11333347 tctccccctcaaaaaagtaatttaatatcgtgtgatccgttggaccacatatcagatattaaactgataagaaca 11333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 13136692 - 13136609
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaa 119  Q
    ||||||||||||| |||||   ||||| |||||||||||||||||||||| ||||   |||||| |||||||| | ||||||||    
T  13136692 tagcaagctactgcaatggctcctccctctcaaaaaagtaatttaatatcgtgtggaccattggtccacatatcagatattaaa 13136609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 21216131 - 21216043
Alignment:
Q  68 aaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||  ||||||||||||  |||||||| | |||||||| ||||| ||| | || ||| || ||||||||| ||||    
T  21216131 aaaaagtaatttaatattttgtgattcattgagccacatataagatattaaactgataagaatagatgctatacatgatcttagtcaaa 21216043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 40054454 - 40054330
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||| | |||  |||||| |||||||| | |||||||| ||||| |||||    
T  40054454 ccaatagcaagctattgaagtggcctctccccctcaaaaaagtaatttaatatcgtatgacccattgggccacatatcagatattaaactgataagaaca 40054355  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  40054354 gatactacacttgatcttagccaaa 40054330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 10944368 - 10944504
Alignment:
Q  36 tagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaata 135  Q
    |||||||||||| ||||||  ||||||| ||||||||||||||||||||| |||||  |||| | |||||||| | |||||||| ||||| ||||| |||    
T  10944368 tagcaagctactaaaatggcttctccccatcaaaaaagtaatttaatatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagata 10944467  T
Q  136 ctacacttgatcttagccaaacagtcgaaaaaggtat 172  Q
    |||||||||||||||||||||  ||||| ||||||||    
T  10944468 ctacacttgatcttagccaaaaggtcgagaaaggtat 10944504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 41841117 - 41841241
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| ||   |||  ||||||| ||||||||||||||||||||| |||||  ||||||||||||||| | |||||||| ||||| |||||    
T  41841117 ccaatagcaagctattggggtggcttctccccatcaaaaaagtaatttaatatcgtgtgacccattggaccacatatcagatattaaactgataagaaca 41841216  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  41841217 gatactacacttgatcttagccaaa 41841241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 44879100 - 44879001
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||||||||||||||  |||||  |||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  44879100 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44879001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 44880821 - 44880920
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||||||||||||||||||||||||||||||||||  |||||  |||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  44880821 tctccccctcaaaaaagtaatttaatatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44880920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 37679897 - 37679756
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    ||||||||||||||| |   ||| ||||||||||||| |||  |||||||||||| |||   |||||| |||||||| | |||||||| ||||| |||||    
T  37679897 ccaatagcaagctaccgtggtggcctctccccctcaataaataaatttaatatcaagtggaccattggcccacatatcagatattaaactgataagaaca 37679798  T
Q  132 aatactacacttgatcttagccaaacagtcgaaaaaggtata 173  Q
     ||||||||||||||||||||||||  | ||| |||||||||    
T  37679797 gatactacacttgatcttagccaaaaggccgagaaaggtata 37679756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 42555053 - 42555172
Alignment:
Q  38 gcaagctactgaaatggtctctccccctcaaaaaag-taatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatac 136  Q
    |||||||||||| ||||  ||| ||| ||||||||  |||||||||||| |||||||||||| ||||||||| | |||||||| |||||  |||| || |    
T  42555053 gcaagctactgagatggcttcttcccttcaaaaaacataatttaatatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattc 42555152  T
Q  137 tacacttgatcttagccaaa 156  Q
    | ||||||||||||||||||    
T  42555153 tgcacttgatcttagccaaa 42555172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 44582970 - 44582871
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    |||| ||||||||||||||||||||||||||   || |||||  | |||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  44582970 tctctccctcaaaaaagtaatttaatatcatagaatccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 44582871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 37682156 - 37682075
Alignment:
Q  75 aatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
    ||||||||||| ||||   |||||| |||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  37682156 aatttaatatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaa 37682075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 42554632 - 42554703
Alignment:
Q  37 agcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatat 108  Q
    ||||| ||||||| ||||  |||||||||||||||| |||||||||||| ||| ||||||||  ||||||||    
T  42554632 agcaaactactgagatggcttctccccctcaaaaaaataatttaatatcgtgtaattcattgacccacatat 42554703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 7525086 - 7524986
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| ||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||    
T  7525086 ctctccccctcaaaaaagtaatttaatatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 7524987  T
Q  156 a 156  Q
    |    
T  7524986 a 7524986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 3643782 - 3643658
Alignment:
Q  32 ccaatagcaagctactgaaatggtctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaaca 131  Q
    |||||||||||||| ||  || || ||||||||| ||||||||||||||||||| |||||  || ||| |||||||| | |||||||| ||||| |||||    
T  3643782 ccaatagcaagctattgtgatagtttctcccccttaaaaaagtaatttaatatcgtgtgacccaatgggccacatatcagatattaaactgataagaaca 3643683  T
Q  132 aatactacacttgatcttagccaaa 156  Q
     ||||||||||||||||||||||||    
T  3643682 gatactacacttgatcttagccaaa 3643658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 1716441 - 1716541
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcatt-ggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    ||||||||| ||||||||||||||||||| |||||  |||| ||||||||||| | |||||||| ||||| ||||| |||||||||||||||||||||||    
T  1716441 tctcccccttaaaaaagtaatttaatatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaa 1716540  T
Q  156 a 156  Q
    |    
T  1716541 a 1716541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 4103363 - 4103263
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    ||||| |||| ||||||| ||||||||||| ||||    ||||| |||||||| | |||||||| ||||| ||||| |||||||||||||||||| ||||    
T  4103363 ctctctccctaaaaaaagcaatttaatatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaa 4103264  T
Q  156 a 156  Q
    |    
T  4103263 a 4103263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 16037966 - 16037881
Alignment:
Q  65 tcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttag 151  Q
    ||||||||||||||||||||| | |||  |||| |||||| ||| | ||||||| || ||| |||||||||||||||||||||||||    
T  16037966 tcaaaaaagtaatttaatatcgtttgacccattagaccac-tatcaaatattaagataataagaacaaatactacacttgatcttag 16037881  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 27134628 - 27134513
Alignment:
Q  57 tctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaaa 156  Q
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T  27134628 tctccccctcaaaaaagtaatttaatatcgtttgactcattagaccacatatcagatattaaaccaataagaacagatactagatttgatcttagtgaaa 27134529  T
Q  157 cagtcgaaaaaggtat 172  Q
      | ||||||||||||    
T  27134528 aggccgaaaaaggtat 27134513  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 8128260 - 8128161
Alignment:
Q  56 ctctccccctcaaaaaagtaatttaatatcatgtgattcattggaccacatattatatattaaaatgatatgaacaaatactacacttgatcttagccaa 155  Q
    ||||||||||||| |||  ||||||||||  |||||  |||||| |||||||| |||||||||| | | | ||||| ||||||||||| |||||| ||||    
T  8128260 ctctccccctcaagaaataaatttaatattgtgtgac-cattggcccacatatcatatattaaactaaaaagaacatatactacacttaatcttaaccaa 8128162  T

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