View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11484_high_17 (Length: 234)
Name: NF11484_high_17
Description: NF11484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11484_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 37948115 - 37947913
Alignment:
| Q |
16 |
agagtcaaaggagtcaaataccaaacttgtctactttaaaccagtaatttgttccttttctctgtagactcgtttttcttgtggaaatattcaagtttta |
115 |
Q |
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| T |
37948115 |
agagtcaaaggagtcaaataccaaacttgtctactttaaaccagtaatttgttccttttctctgtagactcgtttttcttgtggaaatattcaagtttta |
37948016 |
T |
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| Q |
116 |
gcatttaatgaatgcatgtgtgatgtgtccacgattctttatttggacaaaggaaaaacagtatccttcacgacaataaagcatgttgagtattgtactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37948015 |
gcatttaatgaatgcatgtgtgatgtgtccacgattctttatttggacaaaggaaaaacagtatccttcacgacaataaagcatgttgagtattgtactt |
37947916 |
T |
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| Q |
216 |
cat |
218 |
Q |
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||| |
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| T |
37947915 |
cat |
37947913 |
T |
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